Variant report

Variant	rs5912208
Chromosome Location	chrX:78291762-78291763
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs2742206	0.89[ASW][hapmap];0.94[MEX][hapmap];0.85[TSI][hapmap]
rs3810711	0.81[MEX][hapmap]
rs3810712	0.81[MEX][hapmap]
rs3827440	0.81[MEX][hapmap]
rs3827441	0.89[CHD][hapmap];0.94[MEX][hapmap];0.83[TSI][hapmap]
rs5912198	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.80[YRI][hapmap]
rs5912789	0.81[MEX][hapmap]
rs5912791	0.81[MEX][hapmap]
rs5959211	0.89[ASW][hapmap];1.00[CEU][hapmap];0.95[GIH][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.80[YRI][hapmap]
rs5959237	0.88[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3394349	chrX:77977388-78779139	Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
2	esv3324722	chrX:78268856-78334943	Enhancers Weak transcription Active TSS	lncRNA	n/a	inside rSNPs	diseases
3	nsv510837	chrX:78290996-78357205	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:78289400-78292200	Enhancers	Primary T cells from cord blood	blood
2	chrX:78289400-78292600	Enhancers	Dnd41	blood
3	chrX:78289600-78292000	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chrX:78289800-78292400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
5	chrX:78290600-78292600	Enhancers	Primary T helper cells fromperipheralblood	blood
6	chrX:78291000-78291800	Weak transcription	Primary B cells from cord blood	blood
7	chrX:78291400-78292000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chrX:78291400-78292200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
9	chrX:78291400-78292400	Enhancers	Primary T helper cells PMA-I stimulated	--
10	chrX:78291400-78292400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chrX:78291600-78292000	Enhancers	Primary monocytes fromperipheralblood	blood
12	chrX:78291600-78292000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
13	chrX:78291600-78292000	Enhancers	Fetal Thymus	thymus
14	chrX:78291600-78292400	Enhancers	Primary T helper naive cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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