Variant report

Variant	rs5912209
Chromosome Location	chrX:78292320-78292321
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3394349	chrX:77977388-78779139	Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
2	esv3324722	chrX:78268856-78334943	Enhancers Weak transcription Active TSS	lncRNA	n/a	inside rSNPs	diseases
3	nsv510837	chrX:78290996-78357205	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:78289400-78292600	Enhancers	Dnd41	blood
2	chrX:78289800-78292400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
3	chrX:78290600-78292600	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chrX:78291400-78292400	Enhancers	Primary T helper cells PMA-I stimulated	--
5	chrX:78291400-78292400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chrX:78291600-78292400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
7	chrX:78291800-78292400	Enhancers	Primary hematopoietic stem cells short term culture	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links