Variant report

Variant	rs5912736
Chromosome Location	chrX:78338330-78338331
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1023465	0.83[CHB][hapmap];0.89[JPT][hapmap]
rs11795579	0.83[CHB][hapmap];0.89[JPT][hapmap]
rs12845853	0.82[CHB][hapmap];0.94[JPT][hapmap]
rs3810711	0.81[CHB][hapmap];0.94[JPT][hapmap]
rs3810712	0.81[CHB][hapmap];0.94[JPT][hapmap]
rs3827440	0.81[CHB][hapmap];0.94[JPT][hapmap]
rs5912231	0.82[CHB][hapmap];0.94[JPT][hapmap]
rs5912789	0.94[JPT][hapmap]
rs5912790	0.82[CHB][hapmap];0.94[JPT][hapmap]
rs5912791	0.81[CHB][hapmap];0.94[JPT][hapmap]
rs5912792	0.81[CHB][hapmap];0.94[JPT][hapmap]
rs5959237	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs6618868	0.82[CHB][hapmap];0.88[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3394349	chrX:77977388-78779139	Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
2	nsv510837	chrX:78290996-78357205	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:78334400-78343800	Weak transcription	Primary T cells fromperipheralblood	blood
2	chrX:78334600-78339800	Enhancers	Dnd41	blood
3	chrX:78336600-78339200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
4	chrX:78336800-78338800	Enhancers	Primary T cells from cord blood	blood
5	chrX:78336800-78340600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
6	chrX:78337000-78339000	Enhancers	Primary T killer memory cells from peripheral blood	blood
7	chrX:78337000-78341000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
8	chrX:78337200-78338600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
9	chrX:78337600-78339000	Enhancers	Primary T helper cells PMA-I stimulated	--
10	chrX:78337800-78339200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chrX:78337800-78340200	Enhancers	Primary T helper cells fromperipheralblood	blood
12	chrX:78338000-78339000	Enhancers	Primary T helper naive cells from peripheral blood	blood
13	chrX:78338000-78343800	Weak transcription	Primary B cells from peripheral blood	blood
14	chrX:78338000-78343800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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