Variant report

Variant	rs59148659
Chromosome Location	chr6:132933812-132933813
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA1	chr6:132933790-132934248	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
TAAR3	TF binding region

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1081075	1.00[ASN][1000 genomes]
rs1081076	0.98[ASN][1000 genomes]
rs1081077	0.96[ASN][1000 genomes]
rs1081078	0.98[ASN][1000 genomes]
rs55687137	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56823002	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58858474	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58942161	0.86[ASN][1000 genomes]
rs60076882	0.89[AFR][1000 genomes]
rs61731216	0.89[AFR][1000 genomes]
rs73555844	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73555846	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73555851	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73555853	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73555855	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73555862	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73555868	0.81[AFR][1000 genomes]
rs73775132	1.00[ASN][1000 genomes]
rs73775145	0.85[AFR][1000 genomes]
rs73775147	0.89[AFR][1000 genomes]
rs8192647	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532069	chr6:132776411-133462292	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv1015742	chr6:132933666-133285852	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132928000-132935200	Enhancers	Fetal Intestine Small	intestine
2	chr6:132930400-132934000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr6:132930400-132935600	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr6:132930800-132936200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr6:132931000-132934000	Weak transcription	Brain Substantia Nigra	brain
6	chr6:132931600-132937000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr6:132932000-132935600	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr6:132932000-132937200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr6:132932600-132934800	Enhancers	Fetal Intestine Large	intestine
10	chr6:132933000-132934000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr6:132933400-132936400	Active TSS	Duodenum Mucosa	Duodenum
12	chr6:132933600-132934000	Enhancers	Brain Anterior Caudate	brain
13	chr6:132933600-132934000	Enhancers	Brain Hippocampus Middle	brain
14	chr6:132933600-132934000	Enhancers	Stomach Mucosa	stomach
15	chr6:132933600-132934200	Enhancers	Primary T killer memory cells from peripheral blood	blood
16	chr6:132933600-132934400	Active TSS	Duodenum Smooth Muscle	Duodenum
17	chr6:132933600-132934400	Enhancers	HepG2	liver
18	chr6:132933600-132934800	Flanking Active TSS	Liver	Liver
19	chr6:132933600-132935200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr6:132933600-132935600	Enhancers	Rectal Mucosa Donor 31	rectum
21	chr6:132933800-132934200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
22	chr6:132933800-132934200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr6:132933800-132935000	Enhancers	Brain Angular Gyrus	brain

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