Variant report

Variant	rs59170491
Chromosome Location	chr8:86143684-86143685
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:86142876..86144930-chr8:86157426..86159475,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000258256	Chromatin interaction
ENSG00000185015	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs17741049	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17741410	0.83[AFR][1000 genomes]
rs17813585	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17814075	0.83[AFR][1000 genomes]
rs17814183	0.83[AFR][1000 genomes]
rs17814255	0.83[AFR][1000 genomes]
rs4150863	0.88[EUR][1000 genomes]
rs4150895	0.96[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs4150896	0.96[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs4150921	1.00[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs55701281	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs55702127	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56072918	0.87[AFR][1000 genomes]
rs56082812	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56174027	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56366347	0.88[EUR][1000 genomes]
rs57271883	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59712590	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs60087251	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs60789842	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62512497	0.83[AFR][1000 genomes]
rs6987314	1.00[EUR][1000 genomes]
rs6993321	0.85[EUR][1000 genomes]
rs73688688	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73688691	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73688699	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73688702	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3481417	chr8:85279453-86145229	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	esv3481418	chr8:85279453-86145229	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv971329	chr8:86094967-86183119	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv1018483	chr8:86142258-86547831	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:86133000-86145800	Weak transcription	Gastric	stomach
2	chr8:86133800-86157200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr8:86134600-86157200	Weak transcription	Right Atrium	heart
4	chr8:86135200-86147000	Weak transcription	Duodenum Mucosa	Duodenum
5	chr8:86135200-86155200	Weak transcription	Primary B cells from cord blood	blood
6	chr8:86135400-86151400	Weak transcription	HepG2	liver
7	chr8:86136000-86157200	Weak transcription	Liver	Liver
8	chr8:86136200-86157000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr8:86136400-86145800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr8:86136400-86157000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr8:86137400-86147000	Weak transcription	Fetal Intestine Large	intestine
12	chr8:86138200-86145800	Weak transcription	Fetal Intestine Small	intestine
13	chr8:86139600-86157200	Weak transcription	Pancreas	Pancrea
14	chr8:86142600-86157200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr8:86143400-86146000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr8:86143600-86157000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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