Variant report

Variant	rs59173227
Chromosome Location	chr6:164233594-164233595
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs34305741	1.00[AMR][1000 genomes]
rs55683496	1.00[AMR][1000 genomes]
rs56029215	0.89[AFR][1000 genomes]
rs58250488	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59109163	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59348084	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60334591	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60518924	0.83[AFR][1000 genomes]
rs6920091	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73246937	1.00[AMR][1000 genomes]
rs73784840	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73784842	0.90[AFR][1000 genomes]
rs73784844	0.90[AFR][1000 genomes]
rs73784855	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73784862	0.85[AFR][1000 genomes]
rs73786555	1.00[AMR][1000 genomes]
rs9456910	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018860	chr6:163939347-164532579	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538526	chr6:163939347-164532579	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv1026707	chr6:164188210-164749206	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv538527	chr6:164188210-164749206	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv970710	chr6:164226049-164239768	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:164228400-164234800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr6:164230400-164249200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:164231800-164234000	Weak transcription	K562	blood
4	chr6:164231800-164235800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr6:164232000-164235800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr6:164232200-164235800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:164232400-164234400	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr6:164232400-164235800	Weak transcription	Psoas Muscle	Psoas
9	chr6:164232400-164241200	Weak transcription	Brain Germinal Matrix	brain
10	chr6:164232600-164234400	Weak transcription	Fetal Muscle Leg	muscle
11	chr6:164232600-164235000	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr6:164232600-164235200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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dbSNP/dbVar ID: rs12345 /nsv7879
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