Variant report

Variant	rs59186267
Chromosome Location	chr6:56035243-56035244
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 148 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:146)

rs_ID	r²[population]
rs10456726	0.91[ASN][1000 genomes]
rs10484704	0.87[ASN][1000 genomes]
rs10807510	0.87[ASN][1000 genomes]
rs10948974	0.87[ASN][1000 genomes]
rs10948975	0.87[ASN][1000 genomes]
rs12154066	0.87[ASN][1000 genomes]
rs12190671	0.83[ASN][1000 genomes]
rs12190930	0.83[ASN][1000 genomes]
rs12191931	0.87[ASN][1000 genomes]
rs12192012	0.83[ASN][1000 genomes]
rs12193911	0.83[ASN][1000 genomes]
rs12194051	0.87[ASN][1000 genomes]
rs12194997	0.83[ASN][1000 genomes]
rs12195340	0.83[ASN][1000 genomes]
rs12196050	0.83[ASN][1000 genomes]
rs12198637	0.83[ASN][1000 genomes]
rs12200525	0.83[ASN][1000 genomes]
rs12200667	0.83[ASN][1000 genomes]
rs12201373	0.87[ASN][1000 genomes]
rs12201485	0.87[ASN][1000 genomes]
rs12201514	0.87[ASN][1000 genomes]
rs12203286	0.87[ASN][1000 genomes]
rs12203653	0.83[ASN][1000 genomes]
rs12203768	0.83[ASN][1000 genomes]
rs12203922	0.87[ASN][1000 genomes]
rs12203966	0.87[ASN][1000 genomes]
rs12204017	0.81[ASN][1000 genomes]
rs12204069	0.85[ASN][1000 genomes]
rs12205230	0.87[ASN][1000 genomes]
rs12205653	0.83[ASN][1000 genomes]
rs12205903	0.83[ASN][1000 genomes]
rs12206920	0.83[ASN][1000 genomes]
rs12207611	0.83[ASN][1000 genomes]
rs12207665	0.87[ASN][1000 genomes]
rs12208823	0.83[ASN][1000 genomes]
rs12209003	0.87[ASN][1000 genomes]
rs12209120	0.87[ASN][1000 genomes]
rs12209185	0.87[ASN][1000 genomes]
rs12209192	0.81[ASN][1000 genomes]
rs12209464	0.83[ASN][1000 genomes]
rs12209509	0.83[ASN][1000 genomes]
rs12210228	0.83[ASN][1000 genomes]
rs12210901	0.87[ASN][1000 genomes]
rs12211103	0.81[ASN][1000 genomes]
rs12211223	0.81[ASN][1000 genomes]
rs12212032	0.87[ASN][1000 genomes]
rs12212135	0.83[ASN][1000 genomes]
rs12212143	0.83[ASN][1000 genomes]
rs12212211	0.87[ASN][1000 genomes]
rs12214519	0.83[ASN][1000 genomes]
rs12214559	0.83[ASN][1000 genomes]
rs12214594	0.87[ASN][1000 genomes]
rs12214662	0.83[ASN][1000 genomes]
rs12214918	0.87[ASN][1000 genomes]
rs12215027	0.87[ASN][1000 genomes]
rs12215913	0.87[ASN][1000 genomes]
rs12216314	0.87[ASN][1000 genomes]
rs1555095	0.87[ASN][1000 genomes]
rs1555096	0.87[ASN][1000 genomes]
rs16887614	0.98[EUR][1000 genomes]
rs16887615	0.98[EUR][1000 genomes]
rs17219028	0.87[ASN][1000 genomes]
rs17219063	0.87[ASN][1000 genomes]
rs17219126	0.85[ASN][1000 genomes]
rs17219382	0.87[ASN][1000 genomes]
rs17221026	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17223058	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17751114	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17817377	0.81[AMR][1000 genomes]
rs17817407	0.81[AMR][1000 genomes]
rs17817455	0.81[AMR][1000 genomes]
rs17818561	0.87[ASN][1000 genomes]
rs17818687	0.87[ASN][1000 genomes]
rs17819585	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17819753	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17819824	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1925169	0.87[ASN][1000 genomes]
rs1925171	0.87[ASN][1000 genomes]
rs1925172	0.85[ASN][1000 genomes]
rs1925173	0.87[ASN][1000 genomes]
rs1925178	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2076474	0.87[ASN][1000 genomes]
rs2076475	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2143359	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2840992	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2876629	0.83[ASN][1000 genomes]
rs28808332	0.83[ASN][1000 genomes]
rs28844387	0.87[ASN][1000 genomes]
rs34910254	0.83[ASN][1000 genomes]
rs35471617	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3857610	0.87[ASN][1000 genomes]
rs41271844	0.87[ASN][1000 genomes]
rs41464152	0.87[ASN][1000 genomes]
rs4295483	0.83[ASN][1000 genomes]
rs57122743	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60739862	0.87[ASN][1000 genomes]
rs60913237	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62404893	0.83[ASN][1000 genomes]
rs62404894	0.83[ASN][1000 genomes]
rs62404895	0.83[ASN][1000 genomes]
rs62404896	0.83[ASN][1000 genomes]
rs62404897	0.83[ASN][1000 genomes]
rs62404898	0.83[ASN][1000 genomes]
rs62404900	0.83[ASN][1000 genomes]
rs62411452	0.83[ASN][1000 genomes]
rs62411453	0.83[ASN][1000 genomes]
rs62411455	0.83[ASN][1000 genomes]
rs62411456	0.83[ASN][1000 genomes]
rs62411457	0.83[ASN][1000 genomes]
rs62411458	0.83[ASN][1000 genomes]
rs62412799	0.83[ASN][1000 genomes]
rs62412800	0.83[ASN][1000 genomes]
rs62412801	0.83[ASN][1000 genomes]
rs62412803	0.87[ASN][1000 genomes]
rs62412804	0.89[ASN][1000 genomes]
rs62412805	0.85[ASN][1000 genomes]
rs62412806	0.87[ASN][1000 genomes]
rs62412807	0.87[ASN][1000 genomes]
rs62412808	0.87[ASN][1000 genomes]
rs62412809	0.87[ASN][1000 genomes]
rs62412810	0.87[ASN][1000 genomes]
rs62412811	0.87[ASN][1000 genomes]
rs62412812	0.81[ASN][1000 genomes]
rs62412813	0.87[ASN][1000 genomes]
rs62412814	0.87[ASN][1000 genomes]
rs62412815	0.87[ASN][1000 genomes]
rs62412818	0.87[ASN][1000 genomes]
rs62412819	0.87[ASN][1000 genomes]
rs62412820	0.87[ASN][1000 genomes]
rs62412821	0.87[ASN][1000 genomes]
rs62412822	0.87[ASN][1000 genomes]
rs62413462	0.87[ASN][1000 genomes]
rs62413465	0.87[ASN][1000 genomes]
rs62413467	0.87[ASN][1000 genomes]
rs62413469	0.87[ASN][1000 genomes]
rs62413470	0.87[ASN][1000 genomes]
rs62413471	0.83[ASN][1000 genomes]
rs62413472	0.87[ASN][1000 genomes]
rs62413473	0.87[ASN][1000 genomes]
rs62413476	0.85[ASN][1000 genomes]
rs62413477	0.85[ASN][1000 genomes]
rs62413478	0.87[ASN][1000 genomes]
rs62413479	0.87[ASN][1000 genomes]
rs62413547	0.87[ASN][1000 genomes]
rs7454056	0.83[ASN][1000 genomes]
rs763966	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034037	chr6:55222409-56069600	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv885911	chr6:55789704-56143231	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:55984000-56037000	Weak transcription	Fetal Kidney	kidney
2	chr6:56013000-56036400	Weak transcription	Colon Smooth Muscle	Colon
3	chr6:56021800-56035800	Weak transcription	Fetal Muscle Trunk	muscle
4	chr6:56021800-56036800	Weak transcription	Placenta	Placenta
5	chr6:56021800-56053200	Weak transcription	Aorta	Aorta
6	chr6:56028800-56035400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr6:56033400-56035400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr6:56034400-56036800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr6:56035000-56035800	Strong transcription	Fetal Lung	lung

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