Variant report
| Variant | rs59191000 |
|---|---|
| Chromosome Location | chr19:41617386-41617387 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:10)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:10 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | CTCF | chr19:41617288-41617409 | MCF-7 | breast: | n/a | n/a |
| 2 | CTCF | chr19:41617260-41617421 | MCF-7 | breast: | n/a | n/a |
| 3 | CTCF | chr19:41617277-41617399 | H1-hESC | embryonic stem cell: | n/a | n/a |
| 4 | CTCF | chr19:41617247-41617400 | MCF-7 | breast: | n/a | n/a |
| 5 | CTCF | chr19:41617280-41617430 | SK-N-SH_RA | brain: | n/a | n/a |
| 6 | CTCF | chr19:41617240-41617390 | HEK293 | kidney: | n/a | n/a |
| 7 | POLR2A | chr19:41617360-41617442 | MCF-7 | breast: | n/a | n/a |
| 8 | CTCF | chr19:41617254-41617412 | MCF-7 | breast: | n/a | n/a |
| 9 | RAD21 | chr19:41617182-41617478 | H1-hESC | embryonic stem cell: | n/a | n/a |
| 10 | CTCF | chr19:41617280-41617430 | A549 | lung: | n/a | n/a |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| CYP2F1 | TF binding region |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs11879517 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11879521 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12460311 | 0.87[EUR][1000 genomes] |
| rs12460312 | 0.87[EUR][1000 genomes] |
| rs12460939 | 0.81[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12461035 | 0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[ASN][1000 genomes] |
| rs12462215 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[ASN][1000 genomes] |
| rs12608530 | 0.87[EUR][1000 genomes] |
| rs1645694 | 0.93[ASN][1000 genomes] |
| rs3745284 | 0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs58894601 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs59797778 | 0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs59812390 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs61280220 | 0.87[EUR][1000 genomes] |
| rs73545059 | 0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs73545060 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73545063 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73545069 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73545072 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73563325 | 0.87[EUR][1000 genomes] |
| rs8192789 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1065684 | chr19:41516389-41644542 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
