Variant report

Variant	rs59199171
Chromosome Location	chr8:110219431-110219432
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs16879239	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16879247	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16879267	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16879294	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16879299	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16879374	1.00[AMR][1000 genomes]
rs1870390	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58174582	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58370875	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59651628	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60279960	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60417655	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60584579	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61706619	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73700814	1.00[AMR][1000 genomes]
rs73700815	1.00[AMR][1000 genomes]
rs73700826	1.00[AMR][1000 genomes]
rs73700827	1.00[AMR][1000 genomes]
rs73700828	1.00[AMR][1000 genomes]
rs73700831	1.00[AMR][1000 genomes]
rs73700837	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73700840	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73700846	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73700849	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73700852	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73700853	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023204	chr8:110169573-110303085	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1031663	chr8:110177432-110303085	Weak transcription Genic enhancers Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv891272	chr8:110217266-110268104	Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Enhancers Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:110191400-110237400	Weak transcription	Left Ventricle	heart
2	chr8:110202000-110221400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr8:110204800-110230600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr8:110211200-110311600	Weak transcription	Right Ventricle	heart
5	chr8:110216800-110220800	Weak transcription	HSMM	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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