Variant report

Variant	rs59232971
Chromosome Location	chr3:54363115-54363116
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs55906507	1.00[AMR][1000 genomes]
rs57724087	1.00[AMR][1000 genomes]
rs58237311	1.00[AMR][1000 genomes]
rs58845270	1.00[AMR][1000 genomes]
rs59207127	1.00[AMR][1000 genomes]
rs72986056	1.00[AMR][1000 genomes]
rs72986095	1.00[AMR][1000 genomes]
rs72988009	1.00[AMR][1000 genomes]
rs73841973	1.00[AMR][1000 genomes]
rs73841974	0.87[AFR][1000 genomes]
rs73841976	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73841977	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73841978	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73841979	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73841980	1.00[AMR][1000 genomes]
rs73841981	1.00[AMR][1000 genomes]
rs73841983	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73841984	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003621	chr3:53448934-54425322	Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv1014595	chr3:53944473-54846754	Enhancers Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv817328	chr3:54250314-54380438	Enhancers Genic enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:54356600-54370200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:54359400-54367400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr3:54362600-54363200	Enhancers	Hela-S3	cervix

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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