Variant report

Variant	rs59247187
Chromosome Location	chr15:76626049-76626050
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr15:76626021-76626490	HepG2	liver:	n/a	n/a
2	SP1	chr15:76625904-76626387	HepG2	liver:	n/a	n/a
3	EP300	chr15:76625982-76626449	HepG2	liver:	n/a	n/a
4	CTCF	chr15:76626020-76626170	GM06990	blood:	n/a	n/a
5	FOXA1	chr15:76625893-76626380	HepG2	liver:	n/a	n/a
6	MXI1	chr15:76625829-76626712	HepG2	liver:	n/a	n/a
7	RAD21	chr15:76626013-76626689	MCF-7	breast:	n/a	chr15:76626355-76626369 chr15:76626362-76626375 chr15:76626359-76626378
8	CTCF	chr15:76625996-76626697	SK-N-SH	brain:	n/a	chr15:76626363-76626376 chr15:76626361-76626379
9	BCL3	chr15:76625999-76626831	A549	lung:	n/a	n/a
10	FOXA2	chr15:76625965-76626619	HepG2	liver:	n/a	n/a
11	RAD21	chr15:76625967-76626622	A549	lung:	n/a	chr15:76626355-76626369 chr15:76626362-76626375 chr15:76626359-76626378
12	POLR2A	chr15:76625979-76626684	HepG2	liver:	n/a	n/a
13	FOXA1	chr15:76626044-76626431	HepG2	liver:	n/a	n/a
14	JUND	chr15:76626032-76626560	HepG2	liver:	n/a	n/a
15	HDAC2	chr15:76626006-76626504	HepG2	liver:	n/a	n/a
16	MYBL2	chr15:76625947-76626602	HepG2	liver:	n/a	n/a
17	MAX	chr15:76626028-76626447	NB4	blood:	n/a	n/a
18	FOXA1	chr15:76625894-76626534	HepG2	liver:	n/a	n/a
19	HNF4A	chr15:76625982-76626268	HepG2	liver:	n/a	n/a
20	RAD21	chr15:76625843-76626765	SK-N-SH	brain:	n/a	chr15:76626355-76626369 chr15:76626362-76626375 chr15:76626359-76626378
21	CTCF	chr15:76625783-76626790	A549	lung:	n/a	chr15:76625824-76625832 chr15:76626363-76626376 chr15:76626361-76626379
22	MAX	chr15:76625856-76626737	HepG2	liver:	n/a	n/a
23	MYBL2	chr15:76625963-76626603	HepG2	liver:	n/a	n/a
24	HNF4A	chr15:76625978-76626474	HepG2	liver:	n/a	chr15:76626460-76626468
25	FOXA1	chr15:76626005-76626466	HepG2	liver:	n/a	n/a
26	EP300	chr15:76625951-76626391	HepG2	liver:	n/a	n/a
27	SMC3	chr15:76625938-76626690	SK-N-SH	brain:	n/a	chr15:76626366-76626376 chr15:76626363-76626377

No.	Distal block	Cell Line	Cell type
1	chr15:76536052..76538600-chr15:76625414..76627527,2	MCF-7	breast:
2	chr15:76601310..76610583-chr15:76618699..76634643,40	K562	blood:
3	chr15:76621795..76624110-chr15:76624805..76626514,2	MCF-7	breast:
4	chr1:112646202..112647038-chr15:76625778..76626625,2	MCF-7	breast:
5	chr15:76598820..76601362-chr15:76625646..76628540,2	K562	blood:
6	chr15:76527312..76528369-chr15:76625920..76626784,4	MCF-7	breast:
7	chr15:76624512..76627161-chr15:76627320..76629077,4	MCF-7	breast:
8	chr15:76440174..76440912-chr15:76625983..76626603,2	MCF-7	breast:
9	chr15:76600511..76607655-chr15:76613791..76629933,32	MCF-7	breast:
10	chr15:76601574..76614388-chr15:76623703..76634730,38	K562	blood:
11	chr15:76477747..76478594-chr15:76625784..76626375,2	MCF-7	breast:
12	chr15:76617028..76618858-chr15:76625946..76627693,2	MCF-7	breast:
13	chr15:76482924..76483751-chr15:76625816..76626899,5	MCF-7	breast:
14	chr15:76584415..76586850-chr15:76624809..76626509,2	MCF-7	breast:
15	chr15:76488844..76490782-chr15:76625306..76628294,2	K562	blood:
16	chr15:76527288..76528019-chr15:76626012..76626713,2	MCF-7	breast:
17	chr15:76483216..76483808-chr15:76625887..76626857,3	K562	blood:
18	chr15:76577359..76578026-chr15:76626000..76626679,2	MCF-7	breast:

Variant related genes	Relation type
ISL2	TF binding region
ENSG00000159556	Chromatin interaction
ENSG00000140374	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs17363364	0.82[AMR][1000 genomes]
rs68130875	0.86[AMR][1000 genomes]
rs7181686	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs72738839	0.83[AFR][1000 genomes]
rs8023486	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904399	chr15:76622903-76646575	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76621000-76628000	Weak transcription	HSMMtube	muscle
2	chr15:76622800-76626400	Weak transcription	Right Atrium	heart
3	chr15:76625600-76627000	Enhancers	K562	blood
4	chr15:76626000-76626800	Flanking Active TSS	A549	lung
5	chr15:76626000-76627000	Enhancers	Hela-S3	cervix
6	chr15:76626000-76627200	Flanking Active TSS	HepG2	liver

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