Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:150856138..150858164-chr6:151041932..151043730,2	MCF-7	breast:
2	chr6:150856840..150859421-chr6:151018731..151021434,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000120278	Chromatin interaction

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs4133114	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56115385	1.00[EUR][1000 genomes]
rs56240015	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57832891	1.00[EUR][1000 genomes]
rs57941088	1.00[EUR][1000 genomes]
rs58095059	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58578147	1.00[EUR][1000 genomes]
rs59672491	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60016940	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73605181	1.00[EUR][1000 genomes]
rs73606254	1.00[EUR][1000 genomes]
rs73606255	1.00[EUR][1000 genomes]
rs73607031	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73607056	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73607069	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73607070	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73780022	1.00[EUR][1000 genomes]
rs73780023	1.00[EUR][1000 genomes]
rs73780024	1.00[EUR][1000 genomes]
rs73780025	1.00[EUR][1000 genomes]
rs73780026	1.00[EUR][1000 genomes]
rs73780027	1.00[EUR][1000 genomes]
rs73782675	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020067	chr6:150730783-150870708	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv886772	chr6:150743364-151024280	Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv464079	chr6:150836676-150873766	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv604850	chr6:150836676-150873766	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150850400-150858000	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr6:150850600-150858200	Weak transcription	Stomach Smooth Muscle	stomach
3	chr6:150854200-150858200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr6:150856000-150858000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr6:150856200-150858000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr6:150856600-150858000	Weak transcription	Fetal Muscle Leg	muscle
7	chr6:150857000-150862400	Weak transcription	Fetal Lung	lung
8	chr6:150857600-150859000	Enhancers	Fetal Muscle Trunk	muscle
9	chr6:150857600-150860200	Weak transcription	Liver	Liver
10	chr6:150857600-150862400	Weak transcription	HepG2	liver

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