Variant report

Variant	rs5927689
Chromosome Location	chrX:31156285-31156286
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs12557265	0.82[CHB][hapmap]
rs12687954	0.87[TSI][hapmap]
rs1484854	0.92[CHB][hapmap];0.95[YRI][hapmap]
rs1484855	0.90[CEU][hapmap];0.87[TSI][hapmap]
rs1921383	1.00[CEU][hapmap]
rs1921388	0.90[CEU][hapmap]
rs1921710	0.90[CEU][hapmap]
rs2178538	0.82[CHB][hapmap]
rs2404495	0.87[TSI][hapmap]
rs2404497	0.91[CHB][hapmap];0.86[CHD][hapmap]
rs3361	0.89[MKK][hapmap]
rs3747385	0.82[CHB][hapmap];0.84[CHD][hapmap];0.87[TSI][hapmap]
rs426228	1.00[CEU][hapmap]
rs436628	0.90[CEU][hapmap];1.00[TSI][hapmap]
rs4829210	0.91[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap]
rs5926986	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5926987	1.00[CEU][hapmap]
rs5927688	0.90[CEU][hapmap];1.00[TSI][hapmap]
rs5972322	1.00[CEU][hapmap]
rs5972325	0.89[CHB][hapmap]
rs5972328	0.91[CHB][hapmap]
rs6527061	0.91[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap]
rs6527062	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs6653848	0.91[CHB][hapmap]
rs7057738	0.92[CHB][hapmap];0.92[JPT][hapmap]
rs9988310	0.84[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530449	chrX:30962926-31375215	Strong transcription Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv3416705	chrX:31099481-31213379	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:31134000-31188200	Weak transcription	Aorta	Aorta
2	chrX:31135800-31163800	Weak transcription	Rectal Smooth Muscle	rectum
3	chrX:31135800-31182800	Weak transcription	Pancreas	Pancrea
4	chrX:31137200-31183000	Weak transcription	Gastric	stomach
5	chrX:31137800-31165200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chrX:31140200-31227600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chrX:31140400-31170200	Strong transcription	Hela-S3	cervix
8	chrX:31140600-31206000	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chrX:31141400-31167000	Weak transcription	Right Ventricle	heart
10	chrX:31142000-31236600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chrX:31142800-31165600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chrX:31143600-31156400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chrX:31143800-31161600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chrX:31144200-31162400	Weak transcription	Left Ventricle	heart
15	chrX:31144200-31165200	Weak transcription	Brain Hippocampus Middle	brain
16	chrX:31144400-31157600	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chrX:31144800-31161800	Weak transcription	Ovary	ovary
18	chrX:31145400-31165400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chrX:31149000-31157600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chrX:31149800-31156400	Weak transcription	Fetal Heart	heart
21	chrX:31150400-31163000	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chrX:31151400-31156600	Weak transcription	Fetal Intestine Large	intestine
23	chrX:31151600-31183400	Weak transcription	HepG2	liver
24	chrX:31155400-31156400	ZNF genes & repeats	GM12878-XiMat	blood
25	chrX:31155600-31165200	Weak transcription	Fetal Stomach	stomach
26	chrX:31155800-31156400	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
27	chrX:31155800-31156400	Strong transcription	HSMMtube	muscle
28	chrX:31155800-31156600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chrX:31155800-31156600	ZNF genes & repeats	Adipose Nuclei	Adipose
30	chrX:31155800-31156600	Strong transcription	Stomach Smooth Muscle	stomach
31	chrX:31155800-31157000	ZNF genes & repeats	Fetal Muscle Leg	muscle
32	chrX:31155800-31157200	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
33	chrX:31156000-31156400	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chrX:31156000-31156400	ZNF genes & repeats	Brain Anterior Caudate	brain
35	chrX:31156000-31156400	ZNF genes & repeats	Fetal Muscle Trunk	muscle
36	chrX:31156000-31156600	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
37	chrX:31156000-31156600	ZNF genes & repeats	Liver	Liver
38	chrX:31156000-31156800	Strong transcription	Skeletal Muscle Male	skeletal muscle
39	chrX:31156200-31156400	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
40	chrX:31156200-31156400	ZNF genes & repeats	Colon Smooth Muscle	Colon
41	chrX:31156200-31156400	ZNF genes & repeats	Lung	lung
42	chrX:31156200-31156600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chrX:31156200-31156600	Strong transcription	HUES64 Cell Line	embryonic stem cell
44	chrX:31156200-31156600	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
45	chrX:31156200-31156600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
46	chrX:31156200-31156600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
47	chrX:31156200-31156600	ZNF genes & repeats	NH-A	brain
48	chrX:31156200-31157200	ZNF genes & repeats	Fetal Intestine Small	intestine

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