Variant report

Variant	rs59284993
Chromosome Location	chr12:51144963-51144964
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:51144572..51146832-chr12:51148716..51151527,2	K562	blood:
2	chr12:51144406..51146015-chr12:51154196..51156059,2	K562	blood:
3	chr12:51143226..51146888-chr12:51156078..51159984,4	K562	blood:
4	chr12:51138457..51146051-chr12:51156159..51159814,11	MCF-7	breast:
5	chr12:51139062..51150273-chr12:51151292..51159466,16	MCF-7	breast:

Variant related genes	Relation type
ENSG00000271018	Chromatin interaction
ENSG00000123268	Chromatin interaction

Extended variants
information (count: 91 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:91)

rs_ID	r²[population]
rs10506296	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10735827	0.92[ASN][1000 genomes]
rs10747590	0.82[ASN][1000 genomes]
rs10747592	0.92[ASN][1000 genomes]
rs10747593	0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10783368	0.86[EUR][1000 genomes]
rs10783388	0.92[ASN][1000 genomes]
rs10876048	0.86[EUR][1000 genomes]
rs10876054	0.86[EUR][1000 genomes]
rs10876082	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10876083	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10876085	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10876088	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10876091	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11169551	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11169553	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11169556	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12099615	0.90[EUR][1000 genomes]
rs12296379	0.90[EUR][1000 genomes]
rs12320201	0.86[EUR][1000 genomes]
rs13328926	0.90[EUR][1000 genomes]
rs1402693	0.90[EUR][1000 genomes]
rs1521515	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1521517	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1561422	0.92[ASN][1000 genomes]
rs17124888	1.00[EUR][1000 genomes]
rs17124907	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1815010	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1996750	0.90[EUR][1000 genomes]
rs2246840	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2252595	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2684886	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2684890	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2684891	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2684902	0.86[EUR][1000 genomes]
rs2684906	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2700486	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28414775	0.90[EUR][1000 genomes]
rs28479152	0.90[EUR][1000 genomes]
rs2947617	0.86[EUR][1000 genomes]
rs3803181	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3825401	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4129355	0.86[EUR][1000 genomes]
rs4143663	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4562889	0.82[EUR][1000 genomes]
rs4768862	0.84[ASN][1000 genomes]
rs4768887	0.86[EUR][1000 genomes]
rs4768909	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4768915	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4768920	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56753963	0.90[EUR][1000 genomes]
rs56818625	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57328764	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57512759	0.90[EUR][1000 genomes]
rs58301497	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58943330	0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs59194948	0.90[EUR][1000 genomes]
rs59683461	0.90[EUR][1000 genomes]
rs60239257	0.90[EUR][1000 genomes]
rs60494920	0.90[EUR][1000 genomes]
rs60908906	0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs61926300	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6580766	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6580767	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6580768	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6580770	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7131993	0.86[EUR][1000 genomes]
rs7132443	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7135222	0.86[EUR][1000 genomes]
rs7301125	0.86[EUR][1000 genomes]
rs7302749	0.86[EUR][1000 genomes]
rs7303202	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7304793	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7306387	0.90[EUR][1000 genomes]
rs7308872	0.93[ASN][1000 genomes]
rs7310507	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7487150	0.88[ASN][1000 genomes]
rs7487645	0.90[EUR][1000 genomes]
rs7953880	0.90[EUR][1000 genomes]
rs7955310	0.86[EUR][1000 genomes]
rs7959129	0.89[ASN][1000 genomes]
rs7964642	0.89[ASN][1000 genomes]
rs7969251	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7978443	0.90[EUR][1000 genomes]
rs7979184	0.85[EUR][1000 genomes]
rs7979474	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs829125	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs865490	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs939631	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs951591	0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9634264	0.86[EUR][1000 genomes]

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:51063600-51145400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
2	chr12:51080200-51145400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr12:51090400-51145400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr12:51120800-51145400	Strong transcription	Fetal Thymus	thymus
5	chr12:51121400-51145400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr12:51126600-51145400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr12:51126600-51146600	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr12:51130000-51145400	Strong transcription	Stomach Smooth Muscle	stomach
9	chr12:51132800-51145400	Strong transcription	Primary hematopoietic stem cells	blood
10	chr12:51135800-51145200	Weak transcription	Fetal Heart	heart
11	chr12:51135800-51146000	Weak transcription	NHDF-Ad	bronchial
12	chr12:51135800-51156200	Weak transcription	Fetal Kidney	kidney
13	chr12:51138800-51146000	Weak transcription	NHLF	lung
14	chr12:51139000-51145400	Weak transcription	Small Intestine	intestine
15	chr12:51139000-51146600	Weak transcription	Colonic Mucosa	Colon
16	chr12:51139000-51147200	Weak transcription	Gastric	stomach
17	chr12:51139000-51156000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr12:51139200-51148600	Weak transcription	Colon Smooth Muscle	Colon
19	chr12:51139600-51146400	Weak transcription	Hela-S3	cervix
20	chr12:51139600-51156000	Weak transcription	A549	lung
21	chr12:51139800-51147000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr12:51140400-51145000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr12:51140400-51147400	Weak transcription	Esophagus	oesophagus
24	chr12:51140400-51156200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr12:51140600-51147200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr12:51141400-51147000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr12:51141600-51147000	Weak transcription	Fetal Brain Male	brain
28	chr12:51141600-51149200	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr12:51141800-51145400	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr12:51141800-51154400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr12:51141800-51156600	Weak transcription	Fetal Brain Female	brain
32	chr12:51141800-51156800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
33	chr12:51142000-51145600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr12:51142000-51145800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr12:51142000-51146000	Weak transcription	Right Ventricle	heart
36	chr12:51142000-51146600	Weak transcription	Aorta	Aorta
37	chr12:51142000-51147000	Weak transcription	Dnd41	blood
38	chr12:51142000-51147200	Weak transcription	HUES6 Cell Line	embryonic stem cell
39	chr12:51142000-51147400	Weak transcription	Ovary	ovary
40	chr12:51142000-51156200	Weak transcription	HMEC	breast
41	chr12:51142000-51156200	Weak transcription	Osteobl	bone
42	chr12:51142000-51156800	Weak transcription	Pancreas	Pancrea
43	chr12:51142200-51145800	Weak transcription	HSMMtube	muscle
44	chr12:51142200-51146000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
45	chr12:51142200-51146600	Weak transcription	Brain Angular Gyrus	brain
46	chr12:51142200-51147400	Weak transcription	Brain Substantia Nigra	brain
47	chr12:51142200-51147600	Weak transcription	Primary T helper cells fromperipheralblood	blood
48	chr12:51142200-51156000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
49	chr12:51142200-51156200	Weak transcription	Brain Cingulate Gyrus	brain
50	chr12:51142200-51156200	Weak transcription	Rectal Smooth Muscle	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links