Variant report

Variant	rs59289247
Chromosome Location	chr10:89819324-89819325
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs59563535	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831940	chr10:89811247-89989199	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89802600-89822200	Weak transcription	Aorta	Aorta
2	chr10:89803400-89822000	Weak transcription	Psoas Muscle	Psoas
3	chr10:89814800-89820000	Weak transcription	Primary B cells from cord blood	blood
4	chr10:89818200-89822200	Weak transcription	Rectal Smooth Muscle	rectum
5	chr10:89818600-89820400	Weak transcription	Spleen	Spleen
6	chr10:89818600-89822200	Weak transcription	Pancreas	Pancrea
7	chr10:89818800-89819800	Weak transcription	Primary B cells from peripheral blood	blood
8	chr10:89818800-89820600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr10:89819000-89819400	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr10:89819000-89819400	Enhancers	Monocytes-CD14+_RO01746	blood
11	chr10:89819000-89822200	Enhancers	Dnd41	blood
12	chr10:89819200-89819400	Enhancers	Thymus	Thymus
13	chr10:89819200-89819400	Enhancers	GM12878-XiMat	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links