Variant report

Variant	rs59290626
Chromosome Location	chr7:103838112-103838113
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10155973	1.00[EUR][1000 genomes]
rs10230637	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10232393	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10234499	0.99[AFR][1000 genomes]
rs10235130	0.99[AFR][1000 genomes]
rs10239859	0.99[AFR][1000 genomes]
rs10240040	0.99[AFR][1000 genomes]
rs10245622	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10248278	0.97[EUR][1000 genomes]
rs10250051	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10251561	0.97[AFR][1000 genomes]
rs10251976	0.97[EUR][1000 genomes]
rs10260238	0.97[EUR][1000 genomes]
rs10263828	0.99[AFR][1000 genomes]
rs10272659	0.99[AFR][1000 genomes]
rs10275705	1.00[EUR][1000 genomes]
rs10277637	0.97[EUR][1000 genomes]
rs10279675	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10279892	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10281636	0.97[EUR][1000 genomes]
rs12112576	0.91[AFR][1000 genomes]
rs16873424	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17133246	0.99[AFR][1000 genomes]
rs2307409	0.91[AFR][1000 genomes]
rs28481813	0.91[AFR][1000 genomes]
rs55749110	0.92[EUR][1000 genomes]
rs55901574	0.94[EUR][1000 genomes]
rs56390129	0.97[EUR][1000 genomes]
rs57278162	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6949887	0.97[EUR][1000 genomes]
rs6971709	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73415708	0.97[EUR][1000 genomes]
rs73415709	0.97[EUR][1000 genomes]
rs73415735	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73415737	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7810496	0.93[AFR][1000 genomes]
rs9656093	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019640	chr7:103813522-103884705	Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases
2	nsv1026481	chr7:103813522-103890770	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases
3	esv2762692	chr7:103813522-103890782	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases
4	nsv526062	chr7:103817597-103891085	Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases
5	nsv608065	chr7:103817597-103990755	Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103765600-103840200	Weak transcription	Small Intestine	intestine
2	chr7:103766200-103838400	Weak transcription	Spleen	Spleen
3	chr7:103767200-103843600	Weak transcription	Right Ventricle	heart
4	chr7:103796400-103843600	Weak transcription	Fetal Brain Male	brain
5	chr7:103797200-103847000	Weak transcription	Fetal Heart	heart
6	chr7:103802200-103838600	Weak transcription	Psoas Muscle	Psoas
7	chr7:103809400-103838200	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr7:103815400-103839200	Weak transcription	Colonic Mucosa	Colon
9	chr7:103815600-103838400	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr7:103816000-103846200	Weak transcription	Stomach Mucosa	stomach
11	chr7:103818600-103839600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr7:103819000-103838400	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr7:103821800-103839400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr7:103822000-103845400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr7:103822600-103839600	Strong transcription	K562	blood
16	chr7:103823000-103839200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr7:103823000-103839200	Weak transcription	Brain Hippocampus Middle	brain
18	chr7:103823800-103838600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr7:103823800-103839200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr7:103823800-103839200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr7:103823800-103839200	Weak transcription	Esophagus	oesophagus
22	chr7:103824200-103838400	Weak transcription	Brain Cingulate Gyrus	brain
23	chr7:103824400-103838600	Weak transcription	Brain Angular Gyrus	brain
24	chr7:103825200-103839600	Strong transcription	HUES64 Cell Line	embryonic stem cell
25	chr7:103825600-103838400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr7:103826400-103844400	Strong transcription	Primary T cells fromperipheralblood	blood
27	chr7:103826800-103844600	Strong transcription	Adipose Nuclei	Adipose
28	chr7:103827400-103844600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr7:103829600-103839200	Weak transcription	Fetal Intestine Small	intestine
30	chr7:103830000-103838200	Weak transcription	Primary neutrophils fromperipheralblood	blood
31	chr7:103830000-103838400	Weak transcription	Lung	lung
32	chr7:103830000-103839200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr7:103830000-103839200	Weak transcription	Pancreas	Pancrea
34	chr7:103830000-103839600	Weak transcription	NHLF	lung
35	chr7:103830200-103839000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr7:103830200-103839000	Weak transcription	Fetal Stomach	stomach
37	chr7:103830200-103839200	Strong transcription	Primary B cells from cord blood	blood
38	chr7:103830200-103839200	Strong transcription	Primary B cells from peripheral blood	blood
39	chr7:103830200-103839200	Weak transcription	Gastric	stomach
40	chr7:103830400-103838200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
41	chr7:103830400-103838600	Weak transcription	Rectal Smooth Muscle	rectum
42	chr7:103830400-103838800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
43	chr7:103830400-103839000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr7:103830400-103839000	Weak transcription	HMEC	breast
45	chr7:103830400-103839200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr7:103830400-103839200	Weak transcription	Aorta	Aorta
47	chr7:103830400-103839400	Strong transcription	Primary monocytes fromperipheralblood	blood
48	chr7:103830400-103839600	Weak transcription	HSMMtube	muscle
49	chr7:103830600-103839200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
50	chr7:103830600-103839600	Strong transcription	Monocytes-CD14+_RO01746	blood

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