Variant report

Variant	rs59302865
Chromosome Location	chr6:55769005-55769006
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:55760290..55762374-chr6:55767018..55769076,2	MCF-7	breast:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11965332	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2021804	1.00[AMR][1000 genomes]
rs2021805	1.00[AMR][1000 genomes]
rs35124644	1.00[AMR][1000 genomes]
rs35338969	1.00[EUR][1000 genomes]
rs57238989	1.00[AMR][1000 genomes]
rs57942055	1.00[EUR][1000 genomes]
rs58648346	1.00[AMR][1000 genomes]
rs6459121	1.00[EUR][1000 genomes]
rs6902463	1.00[EUR][1000 genomes]
rs6911684	1.00[AMR][1000 genomes]
rs6922937	1.00[EUR][1000 genomes]
rs6925547	1.00[EUR][1000 genomes]
rs6938871	1.00[EUR][1000 genomes]
rs73442195	1.00[EUR][1000 genomes]
rs73444263	1.00[EUR][1000 genomes]
rs73444285	1.00[EUR][1000 genomes]
rs73444297	1.00[AMR][1000 genomes]
rs73446214	1.00[EUR][1000 genomes]
rs73450204	1.00[AMR][1000 genomes]
rs73450209	1.00[AMR][1000 genomes]
rs73450212	1.00[AMR][1000 genomes]
rs73450213	1.00[AMR][1000 genomes]
rs73455141	1.00[EUR][1000 genomes]
rs73457035	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7453182	1.00[EUR][1000 genomes]
rs9464312	1.00[EUR][1000 genomes]
rs9464313	1.00[EUR][1000 genomes]
rs9464314	1.00[EUR][1000 genomes]
rs9475483	1.00[EUR][1000 genomes]
rs9475484	1.00[EUR][1000 genomes]
rs9475485	1.00[EUR][1000 genomes]
rs9885849	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034037	chr6:55222409-56069600	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv2752670	chr6:55614978-55781605	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv1024174	chr6:55713889-55829936	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv1029301	chr6:55713889-55834480	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv830665	chr6:55755560-55920219	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:55768000-55772200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr6:55768200-55772400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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