Variant report

Variant	rs59303423
Chromosome Location	chr11:72065774-72065775
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:72063527..72065807-chr11:72069094..72070941,2	K562	blood:

Variant related genes	Relation type
ENSG00000162129	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs2508864	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57283844	1.00[AMR][1000 genomes]
rs57936278	0.85[AFR][1000 genomes]
rs60941917	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832206	chr11:72006573-72176017	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	esv1794740	chr11:72021720-72332931	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:72012800-72070600	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr11:72026600-72067400	Weak transcription	Fetal Intestine Large	intestine
3	chr11:72033000-72075600	Weak transcription	A549	lung
4	chr11:72038200-72071200	Weak transcription	HMEC	breast
5	chr11:72038400-72076600	Weak transcription	Liver	Liver
6	chr11:72039800-72077400	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr11:72040000-72070800	Weak transcription	Duodenum Mucosa	Duodenum
8	chr11:72040400-72069400	Weak transcription	Fetal Brain Female	brain
9	chr11:72040800-72070800	Weak transcription	Primary hematopoietic stem cells	blood
10	chr11:72041800-72067400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr11:72041800-72072200	Weak transcription	HUVEC	blood vessel
12	chr11:72041800-72076000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr11:72043200-72076600	Weak transcription	Primary B cells from peripheral blood	blood
14	chr11:72045800-72094600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr11:72046000-72066200	Weak transcription	Primary T helper cells fromperipheralblood	blood
16	chr11:72046000-72074200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr11:72046200-72067800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
18	chr11:72048200-72067400	Weak transcription	Fetal Stomach	stomach
19	chr11:72048200-72069400	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr11:72048400-72067800	Weak transcription	NHEK	skin
21	chr11:72049600-72067600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr11:72050000-72092200	Weak transcription	Pancreas	Pancrea
23	chr11:72051200-72067800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr11:72054800-72067600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr11:72059800-72086800	Weak transcription	Fetal Brain Male	brain
26	chr11:72061000-72067600	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr11:72061000-72070200	Weak transcription	Colon Smooth Muscle	Colon
28	chr11:72061000-72075600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr11:72061200-72071200	Weak transcription	Esophagus	oesophagus
30	chr11:72061200-72074600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr11:72061200-72077800	Weak transcription	Brain Angular Gyrus	brain
32	chr11:72061400-72066400	Weak transcription	Adipose Nuclei	Adipose
33	chr11:72061400-72067400	Weak transcription	Left Ventricle	heart
34	chr11:72061400-72067400	Weak transcription	Lung	lung
35	chr11:72061400-72067400	Weak transcription	Right Ventricle	heart
36	chr11:72061400-72067400	Weak transcription	Spleen	Spleen
37	chr11:72061400-72068800	Weak transcription	Brain Cingulate Gyrus	brain
38	chr11:72061400-72069600	Weak transcription	Brain Germinal Matrix	brain
39	chr11:72061400-72070000	Weak transcription	K562	blood
40	chr11:72061400-72088600	Weak transcription	Ovary	ovary
41	chr11:72061400-72089800	Weak transcription	Brain Anterior Caudate	brain
42	chr11:72061400-72090000	Weak transcription	Brain Hippocampus Middle	brain
43	chr11:72061400-72092200	Weak transcription	Gastric	stomach
44	chr11:72061800-72068200	Weak transcription	Fetal Intestine Small	intestine
45	chr11:72062400-72065800	Weak transcription	Right Atrium	heart
46	chr11:72062400-72067400	Weak transcription	Skeletal Muscle Male	skeletal muscle
47	chr11:72062400-72070000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr11:72062400-72070400	Strong transcription	Primary B cells from cord blood	blood
49	chr11:72062400-72076200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr11:72062600-72089600	Weak transcription	Skeletal Muscle Female	skeletal muscle

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