Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11836317	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17103634	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17103637	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17103644	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17103646	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17103688	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17103691	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17103725	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17184182	0.82[EUR][1000 genomes]
rs17184510	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17781591	0.82[EUR][1000 genomes]
rs17781675	0.82[EUR][1000 genomes]
rs17781844	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1827235	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3850600	0.82[EUR][1000 genomes]
rs3850601	0.82[EUR][1000 genomes]
rs59466267	0.86[AFR][1000 genomes]
rs60096568	0.86[AFR][1000 genomes]
rs733642	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs74100346	0.86[AFR][1000 genomes]
rs74100356	0.86[AFR][1000 genomes]
rs74100357	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs74100358	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs74100359	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv559212	chr12:67373549-67850925	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv1054111	chr12:67556780-67865542	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv436140	chr12:67775135-67779010	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:67762000-67780600	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr12:67771600-67782400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr12:67775000-67782200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr12:67776800-67777200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr12:67776800-67779000	Weak transcription	HSMM	muscle
6	chr12:67776800-67782200	Weak transcription	HSMMtube	muscle

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