Variant report

Variant	rs59306873
Chromosome Location	chr15:53503092-53503093
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12148725	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2460612	0.88[ASN][1000 genomes]
rs28438893	0.88[ASN][1000 genomes]
rs475496	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs485510	0.88[ASN][1000 genomes]
rs534869	0.88[ASN][1000 genomes]
rs543335	0.88[ASN][1000 genomes]
rs554548	0.88[ASN][1000 genomes]
rs62006003	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62023565	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62023567	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62023581	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62023582	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62023583	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62023585	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62023588	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62026071	0.85[ASN][1000 genomes]
rs906498	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs969907	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3343986	chr15:53284440-53571936	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1037630	chr15:53324645-53708925	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1051634	chr15:53459129-53565627	Enhancers Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv3385784	chr15:53492461-53521900	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:53498800-53505800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr15:53501200-53503400	Weak transcription	HepG2	liver
3	chr15:53501400-53505000	Weak transcription	Liver	Liver
4	chr15:53502800-53503400	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr15:53502800-53503800	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr15:53503000-53503400	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr15:53503000-53503400	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr15:53503000-53503600	Enhancers	H1 Cell Line	embryonic stem cell
9	chr15:53503000-53503600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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