Variant report

Variant	rs59329149
Chromosome Location	chr19:36887977-36887978
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs55846524	1.00[AMR][1000 genomes]
rs55885724	0.83[AFR][1000 genomes]
rs55981753	0.83[AFR][1000 genomes]
rs56836606	0.83[AFR][1000 genomes]
rs57422489	0.83[AFR][1000 genomes]
rs57586526	0.83[AFR][1000 genomes]
rs57678022	0.83[AFR][1000 genomes]
rs58078073	0.83[AFR][1000 genomes]
rs58119860	1.00[AMR][1000 genomes]
rs60132516	0.83[AFR][1000 genomes]
rs60808598	0.83[AFR][1000 genomes]
rs73928531	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73928609	1.00[AMR][1000 genomes]
rs73928635	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73928642	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73928793	1.00[AMR][1000 genomes]
rs73928795	1.00[AMR][1000 genomes]
rs73929009	0.83[AFR][1000 genomes]
rs73929011	0.83[AFR][1000 genomes]
rs73929123	0.83[AFR][1000 genomes]
rs73929124	0.83[AFR][1000 genomes]
rs73929127	0.83[AFR][1000 genomes]
rs73931028	0.83[AFR][1000 genomes]
rs73931029	0.83[AFR][1000 genomes]
rs73931030	0.83[AFR][1000 genomes]
rs73931036	0.83[AFR][1000 genomes]
rs73931037	0.83[AFR][1000 genomes]
rs73931038	0.83[AFR][1000 genomes]
rs73931040	0.83[AFR][1000 genomes]
rs73931539	1.00[AMR][1000 genomes]
rs73931626	0.83[AFR][1000 genomes]
rs73931627	0.83[AFR][1000 genomes]
rs73931629	0.83[AFR][1000 genomes]
rs73931634	0.83[AFR][1000 genomes]
rs73931636	0.83[AFR][1000 genomes]
rs73931639	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833816	chr19:36824257-37034287	ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
2	nsv1066026	chr19:36878441-36947928	ZNF genes & repeats Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:36880400-36892800	ZNF genes & repeats	Liver	Liver
2	chr19:36880400-36893200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr19:36880400-36904600	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr19:36880600-36889000	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
5	chr19:36880600-36893000	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
6	chr19:36880600-36893200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr19:36880800-36888400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr19:36881400-36892800	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr19:36882000-36891800	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
10	chr19:36882200-36888800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
11	chr19:36882200-36890400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
12	chr19:36882200-36892800	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
13	chr19:36882200-36908800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr19:36882400-36888800	ZNF genes & repeats	Left Ventricle	heart
15	chr19:36882400-36890600	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr19:36882400-36892000	ZNF genes & repeats	Fetal Brain Female	brain
17	chr19:36882400-36892800	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr19:36882400-36896600	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr19:36882400-36907600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr19:36882600-36888600	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr19:36882600-36888800	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland
22	chr19:36882600-36888800	ZNF genes & repeats	Fetal Muscle Leg	muscle
23	chr19:36882600-36889600	ZNF genes & repeats	Fetal Intestine Large	intestine
24	chr19:36882600-36890400	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr19:36882600-36893600	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
26	chr19:36882600-36904200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr19:36882800-36888400	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
28	chr19:36882800-36888800	ZNF genes & repeats	Lung	lung
29	chr19:36882800-36893000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr19:36883000-36888800	ZNF genes & repeats	Thymus	Thymus
31	chr19:36883000-36888800	ZNF genes & repeats	Dnd41	blood
32	chr19:36883000-36890600	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
33	chr19:36883000-36892800	ZNF genes & repeats	Ovary	ovary
34	chr19:36883000-36893000	ZNF genes & repeats	Primary T helper 17 cells PMA-I stimulated	--
35	chr19:36883000-36893400	Strong transcription	Placenta Amnion	Placenta Amnion
36	chr19:36883000-36905200	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
37	chr19:36883200-36892800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr19:36883600-36893800	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
39	chr19:36884800-36890000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
40	chr19:36885600-36908000	Weak transcription	K562	blood
41	chr19:36886000-36890600	ZNF genes & repeats	Fetal Stomach	stomach
42	chr19:36886200-36888200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr19:36886200-36888200	Weak transcription	Pancreas	Pancrea
44	chr19:36886200-36893800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr19:36886400-36889600	Weak transcription	NHDF-Ad	bronchial
46	chr19:36886400-36890600	ZNF genes & repeats	Fetal Intestine Small	intestine
47	chr19:36886400-36901000	Weak transcription	Stomach Mucosa	stomach
48	chr19:36886600-36888200	Weak transcription	Primary T cells from cord blood	blood
49	chr19:36886600-36888200	Strong transcription	Fetal Muscle Trunk	muscle
50	chr19:36886600-36888400	Weak transcription	Brain Hippocampus Middle	brain

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