Variant report

Variant	rs59342806
Chromosome Location	chr4:80157113-80157114
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs17441599	0.85[AFR][1000 genomes]
rs58384464	1.00[AFR][1000 genomes]
rs58914185	1.00[AFR][1000 genomes]
rs59735955	0.85[AFR][1000 genomes]
rs72869043	1.00[AFR][1000 genomes]
rs72869051	1.00[AFR][1000 genomes]
rs72869057	1.00[AFR][1000 genomes]
rs72869067	1.00[AFR][1000 genomes]
rs72870805	1.00[AFR][1000 genomes]
rs72870831	1.00[AFR][1000 genomes]
rs72870849	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000907	chr4:79838948-80224764	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv879505	chr4:79887043-80293046	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:80154200-80157600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr4:80155400-80158000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr4:80155400-80158000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr4:80155400-80158000	Weak transcription	K562	blood
5	chr4:80155800-80158000	Weak transcription	Fetal Lung	lung
6	chr4:80156200-80160400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr4:80156400-80158000	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr4:80156600-80157800	Weak transcription	Fetal Brain Male	brain
9	chr4:80156800-80158000	Weak transcription	Fetal Brain Female	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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