Variant report

Variant	rs59348704
Chromosome Location	chr5:93195045-93195046
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10514379	0.82[AFR][1000 genomes]
rs11742986	0.83[AFR][1000 genomes]
rs17083311	1.00[AMR][1000 genomes]
rs17083335	1.00[AMR][1000 genomes]
rs17083418	0.82[AFR][1000 genomes]
rs58553637	1.00[AMR][1000 genomes]
rs61034760	0.82[AFR][1000 genomes]
rs6875129	1.00[AMR][1000 genomes]
rs6878031	1.00[AMR][1000 genomes]
rs6897186	1.00[AMR][1000 genomes]
rs73772925	1.00[AMR][1000 genomes]
rs73772929	1.00[AMR][1000 genomes]
rs73772931	1.00[AMR][1000 genomes]
rs73773533	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73773535	0.82[AFR][1000 genomes]
rs73773542	0.83[AFR][1000 genomes]
rs7703367	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532196	chr5:92933949-93573527	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv830405	chr5:93086825-93258518	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv882384	chr5:93136661-93380123	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:93162000-93215000	Weak transcription	Aorta	Aorta
2	chr5:93174400-93216800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr5:93177400-93209200	Weak transcription	Gastric	stomach
4	chr5:93180600-93195200	Weak transcription	Duodenum Mucosa	Duodenum
5	chr5:93180800-93203600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr5:93181200-93195200	Weak transcription	Psoas Muscle	Psoas
7	chr5:93181200-93223400	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr5:93181400-93204000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr5:93181400-93222600	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr5:93181400-93231200	Weak transcription	Adipose Nuclei	Adipose
11	chr5:93181600-93222000	Weak transcription	Stomach Smooth Muscle	stomach
12	chr5:93182000-93222600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr5:93185000-93211400	Weak transcription	Thymus	Thymus
14	chr5:93187000-93199600	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr5:93190800-93212000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr5:93191600-93211600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr5:93191800-93209400	Weak transcription	Brain Angular Gyrus	brain
18	chr5:93192000-93199000	Weak transcription	Placenta	Placenta
19	chr5:93192600-93195600	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr5:93192600-93222000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
21	chr5:93193200-93195400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr5:93193200-93195800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr5:93193400-93220800	Weak transcription	Liver	Liver
24	chr5:93193800-93196000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr5:93194000-93219400	Weak transcription	Fetal Lung	lung
26	chr5:93194200-93195600	Weak transcription	Fetal Intestine Small	intestine
27	chr5:93194200-93196400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr5:93194200-93200200	Weak transcription	HSMMtube	muscle
29	chr5:93194200-93201600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
30	chr5:93194200-93202400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
31	chr5:93194200-93209400	Weak transcription	Ovary	ovary
32	chr5:93194200-93210000	Weak transcription	Cortex derived primary cultured neurospheres	brain
33	chr5:93194200-93222400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
34	chr5:93194200-93307600	Weak transcription	Left Ventricle	heart
35	chr5:93194400-93196600	Weak transcription	Fetal Brain Male	brain
36	chr5:93194400-93203200	Weak transcription	Fetal Intestine Large	intestine
37	chr5:93194400-93204200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr5:93194400-93206000	Weak transcription	Primary B cells from cord blood	blood
39	chr5:93194400-93212000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr5:93194400-93212800	Weak transcription	Primary B cells from peripheral blood	blood
41	chr5:93194400-93213800	Weak transcription	Sigmoid Colon	Sigmoid Colon
42	chr5:93194400-93214800	Weak transcription	Primary T cells fromperipheralblood	blood
43	chr5:93194400-93222400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr5:93194400-93222400	Weak transcription	Monocytes-CD14+_RO01746	blood
45	chr5:93194400-93222600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
46	chr5:93194400-93232800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
47	chr5:93194600-93201200	Weak transcription	Primary T helper cells fromperipheralblood	blood
48	chr5:93194600-93209400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr5:93194800-93195400	Weak transcription	Primary T cells from cord blood	blood

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