Variant report

Variant	rs59352428
Chromosome Location	chr11:71004503-71004504
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11603698	0.81[EUR][1000 genomes]
rs11604196	0.81[EUR][1000 genomes]
rs35853657	0.81[EUR][1000 genomes]
rs57565284	1.00[EUR][1000 genomes]
rs60028995	1.00[EUR][1000 genomes]
rs60717420	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs751211	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048123	chr11:70795222-71231382	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:70998400-71009200	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr11:70998600-71005000	Weak transcription	Esophagus	oesophagus
3	chr11:70998600-71010600	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr11:70998600-71017400	Weak transcription	Pancreas	Pancrea
5	chr11:70998800-71009200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr11:71002000-71009200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr11:71004400-71006600	Enhancers	Placenta	Placenta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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