Variant report

Variant	rs59357284
Chromosome Location	chr12:10373580-10373581
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11831375	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2537780	1.00[AMR][1000 genomes]
rs2927559	1.00[AMR][1000 genomes]
rs36171638	1.00[AMR][1000 genomes]
rs60306658	1.00[AMR][1000 genomes]
rs73256668	1.00[AMR][1000 genomes]
rs73256676	1.00[AMR][1000 genomes]
rs73258612	1.00[AMR][1000 genomes]
rs73262336	1.00[AMR][1000 genomes]
rs73262344	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898757	chr12:10229281-10614641	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv1054811	chr12:10350587-10440005	Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:10366800-10386600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr12:10367800-10374000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr12:10367800-10374400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr12:10367800-10374400	Weak transcription	HepG2	liver
5	chr12:10368000-10374200	Weak transcription	NHDF-Ad	bronchial
6	chr12:10368000-10374400	Weak transcription	Small Intestine	intestine
7	chr12:10368000-10375400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr12:10368400-10374200	Weak transcription	K562	blood
9	chr12:10368400-10374400	Weak transcription	NHEK	skin
10	chr12:10368400-10377000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr12:10368400-10378400	Weak transcription	Fetal Heart	heart
12	chr12:10368400-10378600	Weak transcription	Stomach Mucosa	stomach
13	chr12:10368400-10380200	Weak transcription	GM12878-XiMat	blood
14	chr12:10368400-10380400	Weak transcription	Dnd41	blood
15	chr12:10368800-10375000	Strong transcription	Fetal Intestine Small	intestine
16	chr12:10369000-10376000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr12:10369000-10376600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
18	chr12:10369000-10377800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
19	chr12:10369200-10377200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr12:10369400-10377000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr12:10369400-10377600	Strong transcription	Primary neutrophils fromperipheralblood	blood
22	chr12:10370000-10377200	Strong transcription	HUES6 Cell Line	embryonic stem cell
23	chr12:10370200-10376600	Strong transcription	Cortex derived primary cultured neurospheres	brain
24	chr12:10370200-10377200	Strong transcription	Fetal Stomach	stomach
25	chr12:10370400-10376600	Strong transcription	Primary monocytes fromperipheralblood	blood
26	chr12:10370600-10376600	Strong transcription	Primary T cells fromperipheralblood	blood
27	chr12:10370600-10377000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr12:10370600-10377000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr12:10370600-10377200	Strong transcription	H1 Cell Line	embryonic stem cell
30	chr12:10370600-10377200	Strong transcription	H9 Cell Line	embryonic stem cell
31	chr12:10370600-10377200	Strong transcription	Duodenum Smooth Muscle	Duodenum
32	chr12:10370600-10377200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr12:10370600-10377200	Strong transcription	Stomach Smooth Muscle	stomach
34	chr12:10370600-10377600	Strong transcription	Fetal Muscle Leg	muscle
35	chr12:10370800-10376800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr12:10371200-10375200	Strong transcription	Thymus	Thymus
37	chr12:10371200-10376800	Strong transcription	Placenta Amnion	Placenta Amnion
38	chr12:10371200-10377200	Strong transcription	ES-I3 Cell Line	embryonic stem cell
39	chr12:10371200-10377600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr12:10371400-10376600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
41	chr12:10371400-10377600	Strong transcription	Ovary	ovary
42	chr12:10371600-10376400	Strong transcription	Primary T helper cells fromperipheralblood	blood
43	chr12:10371600-10377000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr12:10371600-10377200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
45	chr12:10371600-10377200	Strong transcription	Lung	lung
46	chr12:10371600-10377600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr12:10371800-10374800	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
48	chr12:10371800-10376200	Strong transcription	Fetal Thymus	thymus
49	chr12:10371800-10376400	Strong transcription	iPS-15b Cell Line	embryonic stem cell
50	chr12:10371800-10376600	Strong transcription	Brain Germinal Matrix	brain

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