Variant report

Variant	rs59365170
Chromosome Location	chr3:23202762-23202763
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10510537	0.96[AMR][1000 genomes]
rs1495132	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17012823	0.91[AMR][1000 genomes]
rs17012834	0.96[AMR][1000 genomes]
rs17012844	0.96[AMR][1000 genomes]
rs17012852	0.96[AMR][1000 genomes]
rs17012861	0.96[AMR][1000 genomes]
rs17012927	0.96[AMR][1000 genomes]
rs17012943	0.96[AMR][1000 genomes]
rs17012959	0.96[AMR][1000 genomes]
rs17012969	0.96[AMR][1000 genomes]
rs17012988	0.96[AMR][1000 genomes]
rs17012998	0.96[AMR][1000 genomes]
rs17013023	0.96[AMR][1000 genomes]
rs17013026	0.96[AMR][1000 genomes]
rs17013029	0.96[AMR][1000 genomes]
rs17013035	0.96[AMR][1000 genomes]
rs17013049	0.91[AMR][1000 genomes]
rs2014132	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2291720	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58844120	0.96[AMR][1000 genomes]
rs60709653	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73044305	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73044309	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73044318	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73044329	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73044337	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73044339	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73050236	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73050238	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73050257	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73050270	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73050276	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9809194	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999882	chr3:23121533-23257718	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv834636	chr3:23138653-23301443	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:23201000-23202800	Enhancers	HUVEC	blood vessel
2	chr3:23201000-23203800	Enhancers	NHLF	lung
3	chr3:23201000-23204200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr3:23201200-23203200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr3:23201200-23203400	Enhancers	Osteobl	bone
6	chr3:23201200-23203800	Enhancers	NH-A	brain
7	chr3:23201200-23203800	Enhancers	NHDF-Ad	bronchial
8	chr3:23201800-23202800	Weak transcription	HMEC	breast
9	chr3:23201800-23203400	Weak transcription	A549	lung
10	chr3:23201800-23204600	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr3:23202000-23202800	Enhancers	GM12878-XiMat	blood
12	chr3:23202000-23203000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr3:23202000-23203400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr3:23202000-23203600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr3:23202000-23206600	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr3:23202400-23204200	Enhancers	NHEK	skin

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