Variant report

Variant	rs5937963
Chromosome Location	chrX:74370744-74370745
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chrX:74369928..74371573-chrX:74374800..74376424,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000131269	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs4148831	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs4892539	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs4892558	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs5937967	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs7892016	1.00[CEU][hapmap];0.84[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916758	chrX:73546406-74420929	Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv531128	chrX:74232814-74416887	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	esv3365132	chrX:74308852-74407212	Active TSS Enhancers Bivalent/Poised TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv534085	chrX:74360310-74516106	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:74348200-74374200	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chrX:74352000-74375200	Weak transcription	Right Ventricle	heart
3	chrX:74352200-74373600	Weak transcription	Dnd41	blood
4	chrX:74359800-74374800	Weak transcription	Fetal Intestine Large	intestine
5	chrX:74360200-74374400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
6	chrX:74365200-74374200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chrX:74365600-74375000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chrX:74365800-74375200	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chrX:74366600-74374400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chrX:74367400-74375200	Weak transcription	Fetal Lung	lung
11	chrX:74367600-74375200	Weak transcription	Ovary	ovary
12	chrX:74368400-74375400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chrX:74368800-74371600	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chrX:74369400-74371600	Enhancers	Duodenum Mucosa	Duodenum
15	chrX:74370000-74374000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chrX:74370200-74371000	Weak transcription	Hela-S3	cervix
17	chrX:74370200-74371200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
18	chrX:74370200-74372200	Weak transcription	Primary T helper cells fromperipheralblood	blood
19	chrX:74370200-74373800	Weak transcription	Fetal Intestine Small	intestine
20	chrX:74370200-74374400	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chrX:74370200-74374400	Weak transcription	Stomach Mucosa	stomach
22	chrX:74370400-74374000	Weak transcription	HUES6 Cell Line	embryonic stem cell

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