Variant report

Variant	rs5937967
Chromosome Location	chrX:74377085-74377086
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	HCFC1	chrX:74375746-74377101	Hela-S3	cervix:	n/a	n/a
2	POLR2A	chrX:74377039-74377120	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chrX:74376635..74378465-chrX:74385183..74387134,3	K562	blood:

Variant related genes	Relation type
ABCB7	TF binding region

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12832571	0.94[MEX][hapmap]
rs2886845	1.00[MEX][hapmap];0.81[MKK][hapmap]
rs4148831	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs4892539	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs4892558	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs5937963	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs7892016	1.00[CEU][hapmap];0.84[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916758	chrX:73546406-74420929	Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv531128	chrX:74232814-74416887	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	esv3365132	chrX:74308852-74407212	Active TSS Enhancers Bivalent/Poised TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv534085	chrX:74360310-74516106	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:74373800-74377200	Active TSS	GM12878-XiMat	blood
2	chrX:74374800-74377200	Active TSS	ES-I3 Cell Line	embryonic stem cell
3	chrX:74374800-74377200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chrX:74375000-74377200	Active TSS	Rectal Mucosa Donor 29	rectum
5	chrX:74375200-74377200	Active TSS	Brain Angular Gyrus	brain
6	chrX:74375200-74377200	Active TSS	Brain Inferior Temporal Lobe	brain
7	chrX:74375200-74377200	Active TSS	Psoas Muscle	Psoas
8	chrX:74375200-74377400	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chrX:74375200-74377400	Active TSS	Rectal Smooth Muscle	rectum
10	chrX:74375400-74377200	Active TSS	Brain Cingulate Gyrus	brain
11	chrX:74376600-74377200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chrX:74376800-74377200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
13	chrX:74376800-74377200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
14	chrX:74376800-74377200	Enhancers	Fetal Brain Male	brain
15	chrX:74376800-74377200	Enhancers	Stomach Mucosa	stomach
16	chrX:74376800-74377200	Bivalent Enhancer	HMEC	breast
17	chrX:74376800-74377400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
18	chrX:74376800-74377800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
19	chrX:74377000-74377200	Enhancers	Primary T helper naive cells from peripheral blood	blood
20	chrX:74377000-74377200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
21	chrX:74377000-74377200	Enhancers	Adipose Nuclei	Adipose
22	chrX:74377000-74377200	Flanking Active TSS	Brain Anterior Caudate	brain
23	chrX:74377000-74377200	Enhancers	Colon Smooth Muscle	Colon
24	chrX:74377000-74377200	Flanking Active TSS	Duodenum Mucosa	Duodenum
25	chrX:74377000-74377200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
26	chrX:74377000-74377200	Enhancers	Fetal Intestine Large	intestine
27	chrX:74377000-74377200	Enhancers	Skeletal Muscle Female	skeletal muscle
28	chrX:74377000-74377200	Enhancers	A549	lung
29	chrX:74377000-74377400	Weak transcription	Pancreatic Islets	Pancreatic Islet
30	chrX:74377000-74377400	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chrX:74377000-74377400	Enhancers	Dnd41	blood
32	chrX:74377000-74377600	Enhancers	Primary T helper cells fromperipheralblood	blood
33	chrX:74377000-74377800	Enhancers	Primary T helper naive cells fromperipheralblood	blood

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