Variant report

Variant	rs5938060
Chromosome Location	chrX:74630390-74630391
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11796028	1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap]
rs11796750	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12832571	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs12839727	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1936915	0.87[CHB][hapmap]
rs1936917	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2012661	0.87[CHB][hapmap]
rs2124691	0.87[CHB][hapmap]
rs2124693	0.87[CHB][hapmap]
rs2367174	0.87[CHB][hapmap]
rs2886929	0.87[CHB][hapmap]
rs4892408	1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap]
rs4892580	1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap]
rs5937369	1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap]
rs5937384	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5938075	1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap]
rs5938116	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5981861	1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap]
rs5981875	1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap]
rs5981886	1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap]
rs6607563	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6647139	0.87[CHB][hapmap]
rs6647730	0.84[CHB][hapmap]
rs6647731	0.87[CHB][hapmap]
rs6647753	0.87[CHB][hapmap]
rs7052314	1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap]
rs7878508	0.87[CHB][hapmap]
rs9887743	1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv13841	chrX:74461978-74657064	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv532360	chrX:74462926-74651249	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv916109	chrX:74463757-74651249	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv949041	chrX:74523871-74645058	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv3354641	chrX:74603980-74643202	ZNF genes & repeats Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:74617200-74631200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chrX:74622800-74636800	Weak transcription	Ovary	ovary
3	chrX:74624800-74639000	Weak transcription	Brain Germinal Matrix	brain
4	chrX:74629200-74636600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chrX:74629200-74641400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chrX:74629200-74652400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chrX:74630000-74642000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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