Variant report

Variant	rs5938075
Chromosome Location	chrX:74677123-74677124
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11796028	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap]
rs11796750	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12832571	1.00[CHB][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];0.88[MEX][hapmap];0.81[MKK][hapmap];0.93[YRI][hapmap]
rs12839727	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1936915	0.86[CEU][hapmap];0.87[CHB][hapmap]
rs1936917	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2012661	0.87[CHB][hapmap]
rs2124691	0.87[CHB][hapmap]
rs2124693	0.86[CEU][hapmap];0.87[CHB][hapmap]
rs2367174	0.87[CHB][hapmap]
rs2886845	0.83[GIH][hapmap];0.82[MEX][hapmap]
rs2886929	0.86[CEU][hapmap];0.87[CHB][hapmap]
rs4892408	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap]
rs4892580	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap]
rs5937369	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap]
rs5937384	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap]
rs5938060	1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap]
rs5938116	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5981832	0.93[YRI][hapmap]
rs5981861	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap]
rs5981875	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap]
rs5981886	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap]
rs6607563	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6647139	0.87[CHB][hapmap];0.82[MEX][hapmap]
rs6647730	0.84[CHB][hapmap]
rs6647731	0.86[CEU][hapmap];0.87[CHB][hapmap];0.82[MEX][hapmap]
rs6647753	0.87[CHB][hapmap]
rs7052314	0.84[ASW][hapmap];0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap]
rs7878508	0.86[CEU][hapmap];0.87[CHB][hapmap];0.82[MEX][hapmap]
rs9887743	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534539	chrX:74669627-75200415	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:74667400-74679200	Weak transcription	Ovary	ovary
2	chrX:74667400-74701400	Weak transcription	Aorta	Aorta

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