Variant report

Variant	rs5938085
Chromosome Location	chrX:74724502-74724503
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10047013	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs1017681	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs1017682	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11093538	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12008941	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12009021	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap]
rs12861282	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1936914	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1936918	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1936919	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs1936923	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1998492	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs1998493	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1998494	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2146767	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap]
rs2209045	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2209046	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2209052	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs2224753	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs2224754	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap]
rs2367108	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2367165	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs2367177	1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap]
rs2367178	1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap]
rs3850144	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4892404	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap]
rs4892579	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap]
rs4892583	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs4892587	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4892588	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5937370	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5937392	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs5938047	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap]
rs5938053	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5938054	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5938065	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs5938066	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs5938069	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5938070	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap]
rs5938077	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs5938079	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[TSI][hapmap]
rs5938091	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap]
rs5981358	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5981362	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs6647123	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6647741	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6647747	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs7052066	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534539	chrX:74669627-75200415	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:74722600-74741800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chrX:74723600-74725200	Weak transcription	Ovary	ovary
3	chrX:74723600-74725600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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