Variant report

Variant	rs59405729
Chromosome Location	chr2:182635598-182635599
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10173295	1.00[AMR][1000 genomes]
rs10178791	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10183369	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11884484	1.00[AMR][1000 genomes]
rs11884530	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11898883	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11904481	1.00[AMR][1000 genomes]
rs13385387	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13404097	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13412336	1.00[AMR][1000 genomes]
rs13415704	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28730957	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56043868	1.00[AMR][1000 genomes]
rs59024368	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73030974	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73030984	1.00[AMR][1000 genomes]
rs9288070	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9288071	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9288072	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9630973	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9630988	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005870	chr2:181968637-182921439	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv536063	chr2:181968637-182921439	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv1001558	chr2:182590009-182732738	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:182634400-182636600	Enhancers	NHEK	skin
2	chr2:182634600-182635600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr2:182634600-182637400	Enhancers	HMEC	breast
4	chr2:182634800-182635600	Enhancers	Muscle Satellite Cultured Cells	--
5	chr2:182634800-182635600	Enhancers	Hela-S3	cervix
6	chr2:182634800-182636400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr2:182635000-182636200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr2:182635200-182636600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr2:182635400-182639400	Weak transcription	Osteobl	bone

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links