Variant report

Variant	rs59456427
Chromosome Location	chr4:143426325-143426326
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:143391887..143396825-chr4:143425228..143429441,6	MCF-7	breast:
2	chr4:143388381..143398737-chr4:143415738..143428678,26	MCF-7	breast:
3	chr4:143424625..143426969-chr4:143428786..143431157,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000109452	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10434184	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11930849	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11947710	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs58048713	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72946807	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72946813	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72946826	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72946834	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72946835	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72946839	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72946853	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72946855	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72946865	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72946870	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72946874	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72946877	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72946889	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72946892	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72946896	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72946898	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72946900	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72948704	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72948712	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72948719	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498005	chr4:142515689-143502988	Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143422400-143426600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:143422600-143427400	Weak transcription	Fetal Heart	heart
3	chr4:143423200-143427600	Weak transcription	Psoas Muscle	Psoas
4	chr4:143425600-143429600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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