Variant report

Variant	rs59478583
Chromosome Location	chr8:110567428-110567429
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:110558096..110562827-chr8:110563736..110568570,7	K562	blood:
2	chr8:110551290..110554842-chr8:110566574..110569196,6	MCF-7	breast:
3	chr8:110550646..110556695-chr8:110561304..110567831,11	K562	blood:
4	chr8:110565620..110568770-chr8:110596207..110599107,3	MCF-7	breast:
5	chr8:110551898..110554008-chr8:110566174..110569158,3	MCF-7	breast:
6	chr8:110562492..110564680-chr8:110566996..110568825,2	K562	blood:
7	chr8:110556805..110559542-chr8:110566995..110569157,2	MCF-7	breast:
8	chr8:110566288..110568164-chr8:110571093..110573990,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000147654	Chromatin interaction
ENSG00000147642	Chromatin interaction

rs_ID	r²[population]
rs16879428	1.00[AMR][1000 genomes]
rs16879553	1.00[AMR][1000 genomes]
rs16879567	1.00[AMR][1000 genomes]
rs16879636	1.00[AMR][1000 genomes]
rs1892762	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2124980	1.00[AMR][1000 genomes]
rs56932873	1.00[AMR][1000 genomes]
rs57170073	1.00[AMR][1000 genomes]
rs57937650	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59326650	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59982879	1.00[AMR][1000 genomes]
rs60463599	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73700649	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73700650	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73700652	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73700655	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73700867	1.00[AMR][1000 genomes]
rs73700869	1.00[AMR][1000 genomes]
rs73700876	1.00[AMR][1000 genomes]
rs73700886	1.00[AMR][1000 genomes]
rs73704006	1.00[AMR][1000 genomes]
rs73704009	1.00[AMR][1000 genomes]
rs73704016	1.00[AMR][1000 genomes]
rs73704022	1.00[AMR][1000 genomes]

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:110553000-110569800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr8:110553000-110569800	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr8:110553000-110570000	Weak transcription	Lung	lung
4	chr8:110553000-110571800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr8:110553000-110587000	Weak transcription	Esophagus	oesophagus
6	chr8:110553400-110569800	Weak transcription	Osteobl	bone
7	chr8:110553800-110569600	Weak transcription	Fetal Kidney	kidney
8	chr8:110553800-110569800	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr8:110553800-110613000	Weak transcription	NHLF	lung
10	chr8:110554000-110567800	Weak transcription	Fetal Thymus	thymus
11	chr8:110554000-110569400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr8:110554000-110569600	Weak transcription	Fetal Brain Female	brain
13	chr8:110554000-110569800	Weak transcription	Brain Cingulate Gyrus	brain
14	chr8:110554000-110569800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr8:110554000-110569800	Weak transcription	Fetal Brain Male	brain
16	chr8:110554000-110569800	Weak transcription	Left Ventricle	heart
17	chr8:110554000-110569800	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr8:110554000-110569800	Weak transcription	Small Intestine	intestine
19	chr8:110554000-110569800	Weak transcription	Thymus	Thymus
20	chr8:110554000-110570000	Weak transcription	Fetal Stomach	stomach
21	chr8:110554000-110570000	Weak transcription	Right Ventricle	heart
22	chr8:110554000-110571400	Weak transcription	Fetal Intestine Small	intestine
23	chr8:110554000-110571400	Weak transcription	Pancreas	Pancrea
24	chr8:110554000-110583000	Weak transcription	HMEC	breast
25	chr8:110554000-110589200	Weak transcription	Psoas Muscle	Psoas
26	chr8:110554200-110569800	Weak transcription	Fetal Muscle Leg	muscle
27	chr8:110554200-110569800	Weak transcription	HSMMtube	muscle
28	chr8:110554200-110576000	Weak transcription	Brain Substantia Nigra	brain
29	chr8:110554600-110569200	Weak transcription	Fetal Heart	heart
30	chr8:110554600-110569800	Weak transcription	Rectal Smooth Muscle	rectum
31	chr8:110555200-110568600	Weak transcription	HepG2	liver
32	chr8:110555200-110579200	Weak transcription	Brain Angular Gyrus	brain
33	chr8:110558600-110569400	Weak transcription	Primary neutrophils fromperipheralblood	blood
34	chr8:110558800-110587800	Weak transcription	Stomach Mucosa	stomach
35	chr8:110562000-110568000	Weak transcription	Hela-S3	cervix
36	chr8:110562000-110569200	Weak transcription	Cortex derived primary cultured neurospheres	brain
37	chr8:110562200-110569800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr8:110562200-110570000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr8:110562400-110569800	Weak transcription	HUVEC	blood vessel
40	chr8:110562600-110567800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
41	chr8:110562800-110569800	Weak transcription	Pancreatic Islets	Pancreatic Islet
42	chr8:110562800-110577400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
43	chr8:110563000-110578000	Strong transcription	Primary T cells fromperipheralblood	blood
44	chr8:110563000-110580000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr8:110563000-110586800	Weak transcription	Spleen	Spleen
46	chr8:110563200-110577800	Strong transcription	Dnd41	blood
47	chr8:110563600-110568400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
48	chr8:110563600-110577600	Strong transcription	Primary T helper cells fromperipheralblood	blood
49	chr8:110563600-110580400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
50	chr8:110564000-110569200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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