Variant report

Variant	rs59486407
Chromosome Location	chr17:16560038-16560039
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr17:16559873-16560077	HepG2	liver:	n/a	chr17:16560005-16560016

Variant related genes	Relation type
ZNF624	TF binding region

Extended variants
information (count: 118 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:108)

rs_ID	r²[population]
rs1005369	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1005370	0.98[ASN][1000 genomes]
rs12051673	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12103873	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16959857	0.98[ASN][1000 genomes]
rs16959869	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16959870	0.98[ASN][1000 genomes]
rs28398264	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs28431824	1.00[ASN][1000 genomes]
rs28458310	1.00[ASN][1000 genomes]
rs28458353	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28525101	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28525658	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28526077	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28612609	0.88[ASN][1000 genomes]
rs28626982	1.00[ASN][1000 genomes]
rs28636605	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28674185	1.00[ASN][1000 genomes]
rs28751872	1.00[ASN][1000 genomes]
rs28754336	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28792801	0.98[ASN][1000 genomes]
rs28826699	0.98[ASN][1000 genomes]
rs28865976	0.98[ASN][1000 genomes]
rs28875211	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3813762	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4239135	0.82[ASN][1000 genomes]
rs4352086	1.00[ASN][1000 genomes]
rs4791672	0.98[ASN][1000 genomes]
rs4791673	0.98[ASN][1000 genomes]
rs4791676	1.00[ASN][1000 genomes]
rs4791678	1.00[ASN][1000 genomes]
rs4792757	0.98[ASN][1000 genomes]
rs4792760	0.98[ASN][1000 genomes]
rs4792761	1.00[ASN][1000 genomes]
rs4792762	1.00[ASN][1000 genomes]
rs5000166	1.00[ASN][1000 genomes]
rs55920274	0.96[ASN][1000 genomes]
rs56303920	1.00[ASN][1000 genomes]
rs57448521	0.96[ASN][1000 genomes]
rs58164310	1.00[ASN][1000 genomes]
rs59594997	1.00[ASN][1000 genomes]
rs59826203	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62072781	0.98[ASN][1000 genomes]
rs62072790	0.86[ASN][1000 genomes]
rs62072792	0.98[ASN][1000 genomes]
rs62072845	0.94[ASN][1000 genomes]
rs62073660	0.98[ASN][1000 genomes]
rs6502514	0.98[ASN][1000 genomes]
rs7208075	1.00[ASN][1000 genomes]
rs7213274	1.00[ASN][1000 genomes]
rs7217544	0.98[ASN][1000 genomes]
rs7217717	0.98[ASN][1000 genomes]
rs7218241	1.00[ASN][1000 genomes]
rs7219632	0.98[ASN][1000 genomes]
rs7221518	1.00[ASN][1000 genomes]
rs7222622	0.82[ASN][1000 genomes]
rs7222875	1.00[ASN][1000 genomes]
rs7225641	1.00[ASN][1000 genomes]
rs7226328	0.83[ASN][1000 genomes]
rs72637355	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72637356	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72637357	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72637358	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72637359	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72637360	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72637361	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72637362	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72637363	0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8065558	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8068349	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8074285	0.98[ASN][1000 genomes]
rs8074464	0.98[ASN][1000 genomes]
rs8074487	1.00[ASN][1000 genomes]
rs8075988	0.98[ASN][1000 genomes]
rs8076849	1.00[ASN][1000 genomes]
rs8082225	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8082650	1.00[ASN][1000 genomes]
rs9889227	0.98[ASN][1000 genomes]
rs9890123	0.98[ASN][1000 genomes]
rs9890698	0.98[ASN][1000 genomes]
rs9891138	0.98[ASN][1000 genomes]
rs9894637	0.98[ASN][1000 genomes]
rs9898888	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9899785	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9899919	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9901145	0.86[ASN][1000 genomes]
rs9904901	0.98[ASN][1000 genomes]
rs9905710	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9906261	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9906728	0.98[ASN][1000 genomes]
rs9907785	0.98[ASN][1000 genomes]
rs9908015	1.00[ASN][1000 genomes]
rs9908390	1.00[ASN][1000 genomes]
rs9909044	0.98[ASN][1000 genomes]
rs9909955	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9910087	0.98[ASN][1000 genomes]
rs9910842	1.00[ASN][1000 genomes]
rs9911162	1.00[ASN][1000 genomes]
rs9911524	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9911608	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9911677	0.82[ASN][1000 genomes]
rs9911820	1.00[ASN][1000 genomes]
rs9911851	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9915121	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9916069	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9916258	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9916464	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9916819	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3330182	chr17:15652014-16569534	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	177 gene(s)	inside rSNPs	diseases
2	esv3446844	chr17:15654843-16572246	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	177 gene(s)	inside rSNPs	diseases
3	nsv1063764	chr17:16171649-16662914	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	120 gene(s)	inside rSNPs	diseases
4	nsv1058448	chr17:16389870-16926287	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
5	esv2758442	chr17:16527056-16817437	Active TSS Bivalent Enhancer ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
6	esv2758676	chr17:16527056-16817437	Weak transcription Bivalent Enhancer Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
7	nsv427991	chr17:16527056-16817437	Flanking Active TSS Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
8	nsv907720	chr17:16557606-16758204	Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
9	nsv962268	chr17:16559570-16566202	Enhancers Weak transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
10	nsv978372	chr17:16559570-16587380	Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:16557200-16561800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr17:16557400-16570000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr17:16557800-16566000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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