Variant report

Variant	rs59495365
Chromosome Location	chr4:56898794-56898795
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:56892616..56894598-chr4:56896306..56899212,2	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11947889	0.84[AFR][1000 genomes]
rs60921598	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6849675	1.00[AFR][1000 genomes]
rs73817309	0.81[AFR][1000 genomes]
rs73817313	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73820223	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7665405	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755990	chr4:56317136-57143037	Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv1005845	chr4:56522075-56980357	Active TSS Bivalent Enhancer Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv427681	chr4:56651921-56908209	Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:56835400-56904800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr4:56837200-56905000	Weak transcription	Brain Substantia Nigra	brain
3	chr4:56872200-56904800	Weak transcription	HepG2	liver
4	chr4:56886400-56899600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr4:56891400-56899200	Weak transcription	Osteobl	bone
6	chr4:56891400-56904800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr4:56891600-56899800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr4:56891600-56902800	Weak transcription	HSMM	muscle
9	chr4:56891600-56907200	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr4:56891800-56898800	Weak transcription	Esophagus	oesophagus
11	chr4:56891800-56899600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr4:56891800-56899800	Weak transcription	Fetal Stomach	stomach
13	chr4:56891800-56900800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr4:56891800-56903800	Weak transcription	NHDF-Ad	bronchial
15	chr4:56891800-56905000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr4:56891800-56907000	Weak transcription	Spleen	Spleen
17	chr4:56891800-56907600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr4:56892200-56899000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr4:56892200-56899200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr4:56893600-56899200	Weak transcription	HUVEC	blood vessel
21	chr4:56893600-56907200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr4:56893600-56907400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr4:56893800-56905000	Weak transcription	Placenta	Placenta
24	chr4:56894000-56898800	Weak transcription	Right Ventricle	heart
25	chr4:56894200-56899200	Weak transcription	NH-A	brain
26	chr4:56894200-56907000	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr4:56894400-56898800	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr4:56894600-56905000	Weak transcription	Brain Germinal Matrix	brain
29	chr4:56894800-56899800	Weak transcription	Primary hematopoietic stem cells	blood
30	chr4:56895200-56906600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr4:56895400-56907000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
32	chr4:56895600-56899400	Weak transcription	Liver	Liver
33	chr4:56895600-56901400	Weak transcription	Brain Hippocampus Middle	brain
34	chr4:56895800-56900400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr4:56896400-56903200	Weak transcription	GM12878-XiMat	blood
36	chr4:56896800-56899200	Weak transcription	Primary B cells from cord blood	blood
37	chr4:56896800-56900600	Weak transcription	NHLF	lung
38	chr4:56897000-56898800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr4:56897000-56898800	Weak transcription	Ovary	ovary
40	chr4:56897000-56898800	Weak transcription	Rectal Smooth Muscle	rectum
41	chr4:56897000-56899000	Weak transcription	Primary T helper cells fromperipheralblood	blood
42	chr4:56897000-56899200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr4:56897000-56899800	Weak transcription	Adipose Nuclei	Adipose
44	chr4:56897000-56901000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
45	chr4:56897000-56904800	Weak transcription	Cortex derived primary cultured neurospheres	brain
46	chr4:56897000-56907000	Weak transcription	HUES48 Cell Line	embryonic stem cell
47	chr4:56897200-56899000	Weak transcription	Primary T cells from cord blood	blood
48	chr4:56897200-56899000	Weak transcription	Fetal Intestine Large	intestine
49	chr4:56897200-56899000	Weak transcription	Lung	lung
50	chr4:56897200-56899000	Weak transcription	Thymus	Thymus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links