Variant report

Variant	rs59496972
Chromosome Location	chr8:62991323-62991324
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10096181	0.91[EUR][1000 genomes]
rs10111776	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1400499	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1516996	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1516998	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1516999	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1607124	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1607126	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs168252	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs180751	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1850369	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1966106	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs237413	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs344200	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs344203	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs344204	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs344206	0.88[ASN][1000 genomes]
rs344207	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs344209	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs344210	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs344219	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs344220	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs344230	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs344231	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs344232	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs344233	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs344234	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs344236	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs344238	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs344240	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs344241	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs344242	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs344248	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs344251	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs344252	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs344254	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs344270	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs344272	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs344273	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs344274	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35594910	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58587861	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60173182	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60415651	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62135	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs679344	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs681078	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73263080	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7817852	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7821502	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7833161	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs978253	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890954	chr8:62919691-63023132	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv890955	chr8:62919691-63062581	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1032321	chr8:62954064-63026567	Enhancers Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:62991200-62991600	Enhancers	A549	lung
2	chr8:62991200-62991600	Enhancers	Hela-S3	cervix

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