Variant report

Variant	rs59509230
Chromosome Location	chr11:71977073-71977074
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs11548491	0.85[ASN][1000 genomes]
rs12416741	0.90[ASN][1000 genomes]
rs12418533	0.87[ASN][1000 genomes]
rs1783632	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1784257	0.91[ASN][1000 genomes]
rs2276046	0.85[ASN][1000 genomes]
rs2508199	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2508201	0.86[ASN][1000 genomes]
rs2508204	0.87[ASN][1000 genomes]
rs2508861	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2508865	0.86[ASN][1000 genomes]
rs2508866	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs36049191	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3900852	0.84[ASN][1000 genomes]
rs472837	0.91[ASN][1000 genomes]
rs477354	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs487288	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs506041	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs527905	0.81[ASN][1000 genomes]
rs55723921	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56229279	0.91[ASN][1000 genomes]
rs56333926	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57276029	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs57291879	0.84[ASN][1000 genomes]
rs57464210	0.84[ASN][1000 genomes]
rs57614093	0.86[ASN][1000 genomes]
rs57669200	0.87[ASN][1000 genomes]
rs58306819	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs58489620	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58753751	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs590732	0.91[ASN][1000 genomes]
rs59427981	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59612321	0.86[ASN][1000 genomes]
rs59980097	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60024067	0.87[ASN][1000 genomes]
rs60849224	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61563240	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61736312	0.84[ASN][1000 genomes]
rs650834	0.90[ASN][1000 genomes]
rs70940824	0.81[ASN][1000 genomes]
rs7108974	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7110260	0.81[ASN][1000 genomes]
rs7116854	0.86[ASN][1000 genomes]
rs7130652	0.86[ASN][1000 genomes]
rs73528886	0.86[ASN][1000 genomes]
rs73528892	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73528897	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7952074	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9886	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530623	chr11:71088949-72020418	Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	134 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:71974400-71985600	Weak transcription	Hela-S3	cervix
2	chr11:71975400-71980200	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr11:71976800-71977400	Bivalent Enhancer	Muscle Satellite Cultured Cells	--
4	chr11:71977000-71977200	Flanking Bivalent TSS/Enh	Osteobl	bone
5	chr11:71977000-71977400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr11:71977000-71977400	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr11:71977000-71977400	Enhancers	Adipose Nuclei	Adipose
8	chr11:71977000-71978000	Enhancers	A549	lung

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