The 2.0 version of rSNPBase

Variant report

Variant rs59516180
Chromosome Location chr6:80837934-80837935
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:80 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:80817000-80838200 Weak transcription Fetal Muscle Trunk muscle
2 chr6:80817000-80852800 Weak transcription Psoas Muscle Psoas
3 chr6:80817600-80838200 Weak transcription Aorta Aorta
4 chr6:80817600-80842000 Weak transcription Primary T cells fromperipheralblood blood
5 chr6:80817600-80842400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
6 chr6:80817800-80840600 Weak transcription Ovary ovary
7 chr6:80818000-80838200 Weak transcription Fetal Lung lung
8 chr6:80818000-80861400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
9 chr6:80818000-80866000 Weak transcription Primary T helper cells PMA-I stimulated --
10 chr6:80821400-80838000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
11 chr6:80822600-80840600 Weak transcription Left Ventricle heart
12 chr6:80824400-80843000 Weak transcription Fetal Heart heart
13 chr6:80827400-80842800 Weak transcription Brain Anterior Caudate brain
14 chr6:80829200-80838200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
15 chr6:80829400-80844600 Weak transcription Fetal Thymus thymus
16 chr6:80829400-80852000 Weak transcription Fetal Stomach stomach
17 chr6:80832400-80844600 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
18 chr6:80832600-80838000 Weak transcription Primary hematopoietic stem cells blood
19 chr6:80832600-80838200 Weak transcription K562 blood
20 chr6:80834400-80844200 Strong transcription Primary T cells from cord blood blood
21 chr6:80834600-80838200 Weak transcription Esophagus oesophagus
22 chr6:80835000-80838000 Weak transcription Dnd41 blood
23 chr6:80835000-80838200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
24 chr6:80835400-80838000 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
25 chr6:80835400-80838400 Weak transcription Primary Natural Killer cells fromperipheralblood blood
26 chr6:80835400-80840800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
27 chr6:80835600-80838200 Weak transcription H1 Cell Line embryonic stem cell
28 chr6:80835800-80842800 Weak transcription Monocytes-CD14+_RO01746 blood
29 chr6:80835800-80843000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
30 chr6:80836000-80838200 Weak transcription GM12878-XiMat blood
31 chr6:80836200-80838000 Weak transcription Primary T helper cells fromperipheralblood blood
32 chr6:80836200-80838400 Enhancers Skeletal Muscle Female skeletal muscle
33 chr6:80836200-80838800 Enhancers Muscle Satellite Cultured Cells --
34 chr6:80836200-80839200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
35 chr6:80836200-80852800 Weak transcription Right Ventricle heart
36 chr6:80836400-80838200 Weak transcription Primary B cells from peripheral blood blood
37 chr6:80836400-80838800 Weak transcription Fetal Muscle Leg muscle
38 chr6:80836400-80839200 Weak transcription Sigmoid Colon Sigmoid Colon
39 chr6:80836400-80839800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
40 chr6:80836400-80842800 Weak transcription Brain Cingulate Gyrus brain
41 chr6:80836400-80855800 Weak transcription Primary T regulatory cells fromperipheralblood blood
42 chr6:80836400-80863000 Weak transcription Primary hematopoietic stem cells short term culture blood
43 chr6:80836400-80891200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
44 chr6:80836600-80838000 Enhancers HSMM muscle
45 chr6:80836600-80838200 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
46 chr6:80836600-80839200 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
47 chr6:80836600-80840600 Weak transcription Primary mononuclear cells fromperipheralblood Blood
48 chr6:80836600-80842200 Strong transcription Primary B cells from cord blood blood
49 chr6:80836600-80843000 Weak transcription Pancreatic Islets Pancreatic Islet
50 chr6:80836600-80846800 Weak transcription Rectal Mucosa Donor 29 rectum

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Last update: Aug 31, 2015