Variant report

Variant	rs59527139
Chromosome Location	chr11:93710462-93710463
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:93710125..93711813-chr11:93711990..93713968,2	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11020618	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11605140	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12222414	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1506658	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1518561	0.82[EUR][1000 genomes]
rs2135527	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2256426	0.83[EUR][1000 genomes]
rs2456557	0.83[EUR][1000 genomes]
rs2460038	0.84[EUR][1000 genomes]
rs2460039	0.84[EUR][1000 genomes]
rs2511391	0.83[EUR][1000 genomes]
rs2939619	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2939620	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2945632	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2945633	0.82[EUR][1000 genomes]
rs2945635	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2945636	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2949855	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2949864	0.81[EUR][1000 genomes]
rs2949865	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2949866	0.82[EUR][1000 genomes]
rs2949867	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2949868	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2949869	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2949870	0.82[EUR][1000 genomes]
rs3018380	0.88[EUR][1000 genomes]
rs3020005	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3020007	0.87[EUR][1000 genomes]
rs60833228	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67268439	0.95[EUR][1000 genomes]
rs7113975	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs908752	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs995932	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv508650	chr11:93609010-93713576	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv1049467	chr11:93651025-93778717	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv442	chr11:93665117-93717973	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv2757466	chr11:93676224-93714950	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv2759854	chr11:93676224-93714950	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93709800-93710800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:93709800-93711000	Enhancers	NHEK	skin
3	chr11:93710000-93710800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr11:93710000-93710800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr11:93710000-93710800	Enhancers	HMEC	breast

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