Variant report

Variant	rs59556323
Chromosome Location	chr9:16622518-16622519
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs17739947	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530933	chr9:16251206-16830845	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv530934	chr9:16281246-16779432	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1032856	chr9:16465330-16773471	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv540073	chr9:16465330-16773471	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv430000	chr9:16603483-16671045	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16611400-16626400	Weak transcription	Aorta	Aorta
2	chr9:16613000-16624800	Weak transcription	NH-A	brain
3	chr9:16613200-16624800	Weak transcription	A549	lung
4	chr9:16613800-16625600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr9:16614000-16624200	Weak transcription	HSMM	muscle
6	chr9:16614000-16624600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr9:16614400-16625400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr9:16615600-16625400	Weak transcription	Psoas Muscle	Psoas
9	chr9:16618600-16625400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr9:16618800-16623200	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr9:16618800-16625400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr9:16619200-16624400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr9:16620200-16624200	Weak transcription	HUVEC	blood vessel
14	chr9:16620200-16624800	Weak transcription	Fetal Muscle Leg	muscle
15	chr9:16620200-16625200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr9:16620400-16622600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr9:16620400-16624000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr9:16620400-16624800	Weak transcription	Osteobl	bone
19	chr9:16620400-16625000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr9:16620600-16623000	Weak transcription	Fetal Kidney	kidney
21	chr9:16620600-16623200	Weak transcription	Fetal Lung	lung
22	chr9:16620600-16624000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr9:16620600-16624400	Weak transcription	Stomach Smooth Muscle	stomach
24	chr9:16620800-16624000	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr9:16621200-16622600	Weak transcription	HUES64 Cell Line	embryonic stem cell
26	chr9:16621200-16623400	Weak transcription	Colon Smooth Muscle	Colon
27	chr9:16621200-16623800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr9:16621200-16624000	Weak transcription	HSMMtube	muscle
29	chr9:16621200-16624200	Weak transcription	Rectal Smooth Muscle	rectum
30	chr9:16621200-16625000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr9:16621400-16622600	Weak transcription	H9 Cell Line	embryonic stem cell
32	chr9:16621400-16623000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr9:16621400-16624200	Weak transcription	Fetal Stomach	stomach
34	chr9:16621400-16624400	Weak transcription	NHLF	lung
35	chr9:16621400-16624800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr9:16621400-16625200	Weak transcription	Ovary	ovary
37	chr9:16621400-16625400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr9:16621800-16624200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr9:16622400-16623400	Enhancers	H1 Cell Line	embryonic stem cell
40	chr9:16622400-16626200	Enhancers	iPS-20b Cell Line	embryonic stem cell
41	chr9:16622400-16626600	Enhancers	HUES6 Cell Line	embryonic stem cell
42	chr9:16622400-16628600	Enhancers	iPS-15b Cell Line	embryonic stem cell
43	chr9:16622400-16628600	Enhancers	iPS-18 Cell Line	embryonic stem cell
44	chr9:16622400-16628800	Enhancers	HUES48 Cell Line	embryonic stem cell

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