Variant report

Variant	rs59566504
Chromosome Location	chr2:128094482-128094483
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:128087491..128090123-chr2:128092000..128094792,2	MCF-7	breast:
2	chr2:128089106..128091546-chr2:128093212..128095621,2	K562	blood:
3	chr2:128092913..128094974-chr2:128099236..128102040,2	K562	blood:

Variant related genes	Relation type
ENSG00000169967	Chromatin interaction

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10209678	0.83[ASN][1000 genomes]
rs10803585	0.91[ASN][1000 genomes]
rs10928761	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11886231	0.89[ASN][1000 genomes]
rs11890187	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11901355	0.84[ASN][1000 genomes]
rs12052483	0.91[ASN][1000 genomes]
rs12463451	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12465955	0.86[ASN][1000 genomes]
rs12477214	0.89[ASN][1000 genomes]
rs12479003	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12622436	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12623948	0.83[ASN][1000 genomes]
rs12692064	0.83[ASN][1000 genomes]
rs12989081	0.90[ASN][1000 genomes]
rs12989154	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12991062	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12991768	0.87[ASN][1000 genomes]
rs13029237	0.87[ASN][1000 genomes]
rs1566823	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17015199	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1850689	0.90[ASN][1000 genomes]
rs2090574	0.91[ASN][1000 genomes]
rs2174270	0.86[ASN][1000 genomes]
rs2276583	0.86[ASN][1000 genomes]
rs2896980	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34832797	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35293119	0.90[ASN][1000 genomes]
rs35328149	0.83[ASN][1000 genomes]
rs3768866	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4150407	0.91[ASN][1000 genomes]
rs4150441	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4150454	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4150477	0.89[ASN][1000 genomes]
rs4150495	0.89[ASN][1000 genomes]
rs4150496	0.89[ASN][1000 genomes]
rs4233583	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4233584	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4497825	0.93[ASN][1000 genomes]
rs4662575	0.87[ASN][1000 genomes]
rs4662578	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4662580	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4662711	0.81[ASN][1000 genomes]
rs4662717	0.87[ASN][1000 genomes]
rs4662722	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4662725	0.91[ASN][1000 genomes]
rs55905117	0.87[ASN][1000 genomes]
rs55998967	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58475809	0.83[ASN][1000 genomes]
rs62157549	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62157555	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62160261	0.83[ASN][1000 genomes]
rs6430935	0.85[ASN][1000 genomes]
rs6712213	0.83[ASN][1000 genomes]
rs6712446	0.83[ASN][1000 genomes]
rs6712551	0.83[ASN][1000 genomes]
rs6731176	0.96[ASN][1000 genomes]
rs6732279	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6761447	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7568261	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7580658	0.84[ASN][1000 genomes]
rs7589451	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs867304	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9636237	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9789510	0.89[ASN][1000 genomes]

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:128059400-128109600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:128061600-128098200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr2:128061800-128096800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr2:128062800-128098000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr2:128063400-128098400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr2:128065000-128100200	Weak transcription	Stomach Mucosa	stomach
7	chr2:128069000-128117000	Weak transcription	Small Intestine	intestine
8	chr2:128072200-128098200	Strong transcription	Primary monocytes fromperipheralblood	blood
9	chr2:128072200-128101400	Strong transcription	Monocytes-CD14+_RO01746	blood
10	chr2:128072200-128109600	Weak transcription	Esophagus	oesophagus
11	chr2:128072200-128111800	Weak transcription	K562	blood
12	chr2:128072600-128112000	Weak transcription	NHEK	skin
13	chr2:128074800-128106800	Weak transcription	Spleen	Spleen
14	chr2:128076000-128095400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr2:128076600-128102800	Weak transcription	Hela-S3	cervix
16	chr2:128077000-128116200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr2:128077200-128122800	Weak transcription	Aorta	Aorta
18	chr2:128078400-128097400	Strong transcription	Primary T cells fromperipheralblood	blood
19	chr2:128078600-128096200	Strong transcription	Fetal Thymus	thymus
20	chr2:128078600-128096400	Strong transcription	Fetal Intestine Large	intestine
21	chr2:128078600-128109600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr2:128078800-128095600	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr2:128078800-128096800	Strong transcription	Primary B cells from peripheral blood	blood
24	chr2:128078800-128105400	Weak transcription	HSMMtube	muscle
25	chr2:128079200-128094800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr2:128079200-128096600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr2:128079200-128097000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr2:128079200-128098000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr2:128079400-128107800	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr2:128079600-128099000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr2:128079800-128097600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
32	chr2:128079800-128098400	Weak transcription	Fetal Brain Male	brain
33	chr2:128079800-128101200	Strong transcription	Primary neutrophils fromperipheralblood	blood
34	chr2:128079800-128101800	Weak transcription	HMEC	breast
35	chr2:128079800-128107600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
36	chr2:128079800-128114600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr2:128081200-128101200	Weak transcription	Brain Germinal Matrix	brain
38	chr2:128081400-128101600	Weak transcription	Placenta Amnion	Placenta Amnion
39	chr2:128081400-128102400	Weak transcription	Fetal Brain Female	brain
40	chr2:128081600-128095200	Weak transcription	Muscle Satellite Cultured Cells	--
41	chr2:128082000-128105200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
42	chr2:128082000-128114600	Weak transcription	Cortex derived primary cultured neurospheres	brain
43	chr2:128082200-128097000	Weak transcription	NH-A	brain
44	chr2:128083400-128095800	Weak transcription	Ovary	ovary
45	chr2:128083400-128099800	Weak transcription	NHDF-Ad	bronchial
46	chr2:128083600-128097200	Weak transcription	Brain Cingulate Gyrus	brain
47	chr2:128083600-128105400	Weak transcription	Brain Substantia Nigra	brain
48	chr2:128083600-128117000	Weak transcription	Brain Anterior Caudate	brain
49	chr2:128085200-128095200	Weak transcription	Primary hematopoietic stem cells	blood
50	chr2:128086400-128094800	Weak transcription	HSMM	muscle

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