Variant report

Variant	rs59573747
Chromosome Location	chr6:150922923-150922924
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:150914794..150917748-chr6:150922118..150924160,3	K562	blood:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs17079757	1.00[AMR][1000 genomes]
rs17079779	1.00[AMR][1000 genomes]
rs56948265	1.00[AMR][1000 genomes]
rs57385185	0.88[AFR][1000 genomes]
rs58842154	0.88[AFR][1000 genomes]
rs60969274	0.98[AFR][1000 genomes]
rs61081754	0.88[AFR][1000 genomes]
rs6902794	0.88[AFR][1000 genomes]
rs73619627	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73619628	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73619632	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73619646	0.88[AFR][1000 genomes]
rs73619648	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886772	chr6:150743364-151024280	Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv3415576	chr6:150920109-150923107	Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150920400-150923000	Active TSS	Right Atrium	heart
2	chr6:150920400-150923200	Active TSS	Thymus	Thymus
3	chr6:150921000-150923000	Active TSS	Lung	lung
4	chr6:150922200-150923000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr6:150922200-150923000	Flanking Active TSS	Duodenum Mucosa	Duodenum
6	chr6:150922200-150927600	Weak transcription	Spleen	Spleen
7	chr6:150922200-150930600	Weak transcription	Aorta	Aorta
8	chr6:150922400-150923000	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
9	chr6:150922400-150923000	Bivalent Enhancer	Fetal Intestine Large	intestine
10	chr6:150922400-150923000	Enhancers	Placenta	Placenta
11	chr6:150922400-150923000	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
12	chr6:150922400-150923400	Flanking Active TSS	Primary B cells from cord blood	blood
13	chr6:150922400-150923800	Flanking Active TSS	Fetal Thymus	thymus
14	chr6:150922400-150924800	Enhancers	Primary B cells from peripheral blood	blood
15	chr6:150922400-150927600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr6:150922400-150927600	Weak transcription	Brain Substantia Nigra	brain
17	chr6:150922400-150927600	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr6:150922400-150941400	Weak transcription	Colonic Mucosa	Colon
19	chr6:150922600-150923000	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
20	chr6:150922600-150923000	Enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr6:150922600-150923000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr6:150922600-150923000	Enhancers	HMEC	breast
23	chr6:150922600-150923000	Bivalent Enhancer	HUVEC	blood vessel
24	chr6:150922600-150923200	Enhancers	Fetal Heart	heart
25	chr6:150922600-150923600	Enhancers	Cortex derived primary cultured neurospheres	brain
26	chr6:150922600-150927800	Weak transcription	Small Intestine	intestine
27	chr6:150922600-150928000	Weak transcription	Liver	Liver
28	chr6:150922800-150923000	Flanking Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr6:150922800-150923000	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr6:150922800-150923000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr6:150922800-150923000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
32	chr6:150922800-150923000	Bivalent Enhancer	Fetal Lung	lung
33	chr6:150922800-150923000	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
34	chr6:150922800-150923000	Bivalent Enhancer	Fetal Muscle Leg	muscle
35	chr6:150922800-150924200	Enhancers	Fetal Kidney	kidney
36	chr6:150922800-150927600	Weak transcription	Brain Angular Gyrus	brain
37	chr6:150922800-150929600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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