Variant report

Variant	rs59577029
Chromosome Location	chr7:126420784-126420785
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11981611	0.85[AFR][1000 genomes]
rs55774132	0.81[AFR][1000 genomes]
rs56813278	0.91[AFR][1000 genomes]
rs61755404	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6944324	0.81[AFR][1000 genomes]
rs6948817	0.85[AFR][1000 genomes]
rs73720780	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73720781	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7778713	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7796521	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529300	chr7:125669493-126587858	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1032938	chr7:126067684-126587859	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv539119	chr7:126067684-126587859	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv889187	chr7:126219766-126478190	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv1032612	chr7:126417533-126456282	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:126420400-126420800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
2	chr7:126420600-126420800	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr7:126420600-126420800	Enhancers	Esophagus	oesophagus
4	chr7:126420600-126421000	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr7:126420600-126421000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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