Variant report

Variant	rs59582363
Chromosome Location	chr19:36337499-36337500
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SMC3	chr19:36337238-36337580	Hela-S3	cervix:	n/a	n/a
2	FOXA1	chr19:36337202-36337565	HepG2	liver:	n/a	chr19:36337426-36337441
3	CTCF	chr19:36337335-36337504	Hela-S3	cervix:	n/a	chr19:36337383-36337396 chr19:36337388-36337396 chr19:36337446-36337454
4	FOXA2	chr19:36337308-36337582	HepG2	liver:	n/a	n/a
5	RAD21	chr19:36337237-36337571	Hela-S3	cervix:	n/a	chr19:36337255-36337267 chr19:36337382-36337395 chr19:36337379-36337398
6	CTCF	chr19:36337328-36337499	Pancreas_OC	pancreas:	n/a	chr19:36337383-36337396 chr19:36337388-36337396 chr19:36337446-36337454
7	RAD21	chr19:36337285-36337537	H1-hESC	embryonic stem cell:	n/a	chr19:36337382-36337395 chr19:36337379-36337398
8	CEBPB	chr19:36337266-36337585	Hela-S3	cervix:	n/a	n/a
9	CTCF	chr19:36337360-36337510	Caco-2	colon:	n/a	chr19:36337383-36337396 chr19:36337388-36337396 chr19:36337446-36337454
10	CTCF	chr19:36337360-36337510	HepG2	liver:	n/a	chr19:36337383-36337396 chr19:36337388-36337396 chr19:36337446-36337454
11	FOXA2	chr19:36337086-36337754	A549	lung:	n/a	n/a
12	RAD21	chr19:36337160-36337557	H1-hESC	embryonic stem cell:	n/a	chr19:36337164-36337176 chr19:36337255-36337267 chr19:36337382-36337395 chr19:36337379-36337398
13	CTCF	chr19:36337420-36337570	HMEC	breast:	n/a	chr19:36337446-36337454
14	MAX	chr19:36335796-36337622	A549	lung:	n/a	chr19:36337279-36337289
15	CTCF	chr19:36337380-36337530	SAEC	small airway:	n/a	chr19:36337383-36337396 chr19:36337388-36337396 chr19:36337446-36337454
16	CTCF	chr19:36337360-36337510	HEEpiC	esophagus:	n/a	chr19:36337383-36337396 chr19:36337388-36337396 chr19:36337446-36337454
17	ZNF143	chr19:36337293-36337580	H1-hESC	embryonic stem cell:	n/a	chr19:36337477-36337496
18	CTCF	chr19:36337360-36337510	SAEC	small airway:	n/a	chr19:36337383-36337396 chr19:36337388-36337396 chr19:36337446-36337454
19	SIN3A	chr19:36336189-36337565	H1-hESC	embryonic stem cell:	n/a	n/a
20	FOXA1	chr19:36337235-36337580	HepG2	liver:	n/a	chr19:36337426-36337441
21	MAX	chr19:36337286-36337512	Hela-S3	cervix:	n/a	n/a
22	BCL3	chr19:36337155-36337715	A549	lung:	n/a	chr19:36337209-36337216
23	MYC	chr19:36337406-36337551	MCF10A-Er-Src	breast:	n/a	n/a
24	BACH1	chr19:36337453-36337538	K562	blood:	n/a	n/a
25	RCOR1	chr19:36337277-36337526	Hela-S3	cervix:	n/a	n/a
26	TCF12	chr19:36337265-36337523	H1-hESC	embryonic stem cell:	n/a	n/a
27	FOXA1	chr19:36337308-36337526	T-47D	breast:	n/a	chr19:36337426-36337441
28	CTCF	chr19:36337360-36337510	Hela-S3	cervix:	n/a	chr19:36337383-36337396 chr19:36337388-36337396 chr19:36337446-36337454
29	CTCF	chr19:36337360-36337510	HRPEpiC	eye:	n/a	chr19:36337383-36337396 chr19:36337388-36337396 chr19:36337446-36337454
30	FOXA1	chr19:36337318-36337551	HepG2	liver:	n/a	chr19:36337426-36337441
31	REST	chr19:36337280-36337582	H1-hESC	embryonic stem cell:	n/a	n/a
32	BCL3	chr19:36336812-36337721	A549	lung:	n/a	chr19:36337209-36337216
33	REST	chr19:36337091-36337894	H1-neurons	neurons:	n/a	n/a
34	CTCF	chr19:36337360-36337510	HEK293	kidney:	n/a	chr19:36337383-36337396 chr19:36337388-36337396 chr19:36337446-36337454
35	FOXA2	chr19:36337138-36337632	A549	lung:	n/a	n/a
36	MAX	chr19:36335995-36337622	A549	lung:	n/a	chr19:36337279-36337289
37	TCF7L2	chr19:36337317-36337534	PANC-1	pancreas:	n/a	n/a
38	MAX	chr19:36336193-36337594	MCF-7	breast:	n/a	chr19:36337279-36337289

No.	Distal block	Cell Line	Cell type
1	chr19:36333306..36335125-chr19:36337334..36339414,2	K562	blood:
2	chr19:36336450..36338602-chr19:36340290..36342312,2	K562	blood:
3	chr19:36336433..36337946-chr19:36338192..36339796,3	K562	blood:
4	chr19:36337442..36339208-chr19:36341974..36344339,2	K562	blood:
5	chr19:36336052..36339154-chr19:36344963..36347982,3	MCF-7	breast:
6	chr19:36335744..36339702-chr19:36359166..36361673,6	MCF-7	breast:
7	chr19:36237682..36239540-chr19:36335176..36337549,2	MCF-7	breast:
8	chr19:36335676..36337950-chr19:36339601..36341790,2	K562	blood:
9	chr19:36336403..36338756-chr19:36340642..36343905,3	MCF-7	breast:

Variant related genes	Relation type
NPHS1	TF binding region
ENSG00000267439	Chromatin interaction
ENSG00000267796	Chromatin interaction
ENSG00000161270	Chromatin interaction
ENSG00000126259	Chromatin interaction
ENSG00000105290	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs2285450	0.85[ASN][1000 genomes]
rs412175	0.85[ASN][1000 genomes]
rs437168	0.94[ASN][1000 genomes]
rs443186	0.82[ASN][1000 genomes]
rs447783	0.93[ASN][1000 genomes]
rs56117924	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7248157	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs73928329	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432045	chr19:35556260-36520760	Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
2	nsv911638	chr19:36265508-36537959	Enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
3	esv3526489	chr19:36306483-36741945	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	114 gene(s)	inside rSNPs	diseases
4	esv3526490	chr19:36306483-36741945	Genic enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	114 gene(s)	inside rSNPs	diseases
5	esv1831737	chr19:36324324-36690874	Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	103 gene(s)	inside rSNPs	diseases
6	esv3397651	chr19:36326933-36377725	Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
7	nsv833812	chr19:36331913-36507594	Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:36336200-36337600	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr19:36336200-36337600	Bivalent Enhancer	Stomach Mucosa	stomach
3	chr19:36337000-36347000	Weak transcription	Right Atrium	heart
4	chr19:36337200-36337600	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr19:36337200-36337600	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
6	chr19:36337200-36337600	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
7	chr19:36337200-36337800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr19:36337400-36337600	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
9	chr19:36337400-36337600	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
10	chr19:36337400-36337600	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
11	chr19:36337400-36337600	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
12	chr19:36337400-36337600	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
13	chr19:36337400-36337600	Flanking Active TSS	HepG2	liver
14	chr19:36337400-36337800	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
15	chr19:36337400-36337800	Bivalent Enhancer	Primary T killer memory cells from peripheral blood	blood
16	chr19:36337400-36337800	Bivalent Enhancer	Brain Anterior Caudate	brain
17	chr19:36337400-36337800	Bivalent Enhancer	Fetal Intestine Small	intestine
18	chr19:36337400-36337800	Enhancers	A549	lung
19	chr19:36337400-36339200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr19:36337400-36340400	Weak transcription	Pancreas	Pancrea
21	chr19:36337400-36341800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links