Variant report

Variant	rs59586266
Chromosome Location	chr11:59889616-59889617
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:59889345..59891976-chr11:59896394..59897980,2	K562	blood:
2	chr11:59880513..59883091-chr11:59889484..59891627,2	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs35033981	1.00[AMR][1000 genomes]
rs59036106	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73479087	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73479093	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73479095	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73483218	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73483221	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7940080	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7949515	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832173	chr11:59788884-59940560	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv468579	chr11:59814287-59975400	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv555150	chr11:59814287-59975400	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59879400-59897600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr11:59882400-59892200	Weak transcription	Fetal Intestine Small	intestine
3	chr11:59884800-59892600	Weak transcription	HMEC	breast
4	chr11:59888400-59892000	Weak transcription	Primary B cells from peripheral blood	blood
5	chr11:59888800-59891800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr11:59889000-59891600	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr11:59889000-59891800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr11:59889000-59892800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr11:59889200-59889800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr11:59889200-59890800	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr11:59889200-59891600	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr11:59889200-59891800	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr11:59889200-59891800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr11:59889200-59891800	Weak transcription	Stomach Mucosa	stomach
15	chr11:59889200-59892000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr11:59889200-59892200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr11:59889200-59892400	Weak transcription	Ovary	ovary
18	chr11:59889200-59893000	Enhancers	K562	blood
19	chr11:59889200-59893400	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr11:59889400-59891000	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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