Variant report

Variant	rs5959237
Chromosome Location	chrX:78336372-78336373
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1023465	0.88[JPT][hapmap]
rs11795579	0.88[JPT][hapmap]
rs12845853	0.88[CHB][hapmap];0.93[JPT][hapmap]
rs2742206	0.83[MEX][hapmap]
rs3810711	0.88[CHB][hapmap];0.94[CHD][hapmap];0.94[JPT][hapmap];0.94[MEX][hapmap]
rs3810712	0.88[CHB][hapmap];0.94[CHD][hapmap];0.94[JPT][hapmap];0.94[MEX][hapmap];0.82[TSI][hapmap]
rs3827440	0.88[CHB][hapmap];0.94[CHD][hapmap];0.94[JPT][hapmap];0.94[MEX][hapmap]
rs3827441	0.83[MEX][hapmap]
rs5912198	0.83[MEX][hapmap]
rs5912231	0.88[CHB][hapmap];0.94[JPT][hapmap]
rs5912736	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs5912789	0.82[CHB][hapmap];0.94[CHD][hapmap];0.94[JPT][hapmap];0.94[MEX][hapmap]
rs5912790	0.87[CHB][hapmap];0.94[JPT][hapmap]
rs5912791	0.88[CHB][hapmap];0.94[CHD][hapmap];0.94[JPT][hapmap];0.94[MEX][hapmap]
rs5912792	0.87[CHB][hapmap];0.94[JPT][hapmap]
rs5959211	0.83[MEX][hapmap]
rs6618868	0.80[CHD][hapmap];0.88[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3394349	chrX:77977388-78779139	Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
2	nsv510837	chrX:78290996-78357205	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:78334400-78343800	Weak transcription	Primary T cells fromperipheralblood	blood
2	chrX:78334600-78339800	Enhancers	Dnd41	blood
3	chrX:78335000-78337000	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chrX:78335400-78336400	Enhancers	Muscle Satellite Cultured Cells	--
5	chrX:78335600-78337400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chrX:78336000-78336400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chrX:78336000-78337000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chrX:78336000-78337000	Weak transcription	GM12878-XiMat	blood
9	chrX:78336200-78336600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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