Variant report
| Variant | rs5959651 |
|---|---|
| Chromosome Location | chrX:79266105-79266106 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | FOS | chrX:79265983-79266158 | MCF10A-Er-Src | breast: | n/a | n/a |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| TBX22 | TF binding region |
rSNPs within LD-proxies of this variant (count:8)
| rs_ID | r2[population] |
|---|---|
| rs4578100 | 0.82[CEU][hapmap];0.83[MEX][hapmap];0.90[TSI][hapmap] |
| rs6616415 | 0.88[CEU][hapmap];0.83[MEX][hapmap];0.90[TSI][hapmap] |
| rs6616419 | 0.80[CEU][hapmap] |
| rs6621536 | 0.86[TSI][hapmap] |
| rs6621539 | 0.88[CEU][hapmap];0.83[MEX][hapmap];0.90[TSI][hapmap] |
| rs6621546 | 0.82[CEU][hapmap];0.83[MEX][hapmap];0.90[TSI][hapmap] |
| rs742307 | 0.82[CEU][hapmap];0.83[MEX][hapmap];0.90[TSI][hapmap] |
| rs742308 | 0.82[CEU][hapmap] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3370157 | chrX:78921830-79315481 | Enhancers Bivalent/Poised TSS Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv918040 | chrX:78945886-79393258 | Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 2 gene(s) | inside rSNPs | diseases |
| 3 | esv3412365 | chrX:79161145-79406542 | Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv521266 | chrX:79231201-79274979 | Enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh | TF binding regionCpG islandlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
