Variant report

Variant	rs59601963
Chromosome Location	chr16:80685166-80685167
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs7194296	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1060621	chr16:80532848-80980616	Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
2	nsv542989	chr16:80532848-80980616	Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
3	nsv1058764	chr16:80656966-80707848	Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1057357	chr16:80662770-80794945	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80646600-80687800	Weak transcription	Pancreas	Pancrea
2	chr16:80663200-80690200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr16:80667400-80690000	Weak transcription	Spleen	Spleen
4	chr16:80674400-80687800	Weak transcription	Hela-S3	cervix
5	chr16:80674400-80707600	Weak transcription	Placenta	Placenta
6	chr16:80684600-80690400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr16:80684800-80685200	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr16:80684800-80689600	Weak transcription	Primary T helper cells PMA-I stimulated	--
9	chr16:80684800-80689800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr16:80684800-80689800	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr16:80684800-80689800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr16:80684800-80689800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr16:80684800-80690000	Weak transcription	Primary hematopoietic stem cells	blood
14	chr16:80684800-80690000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr16:80685000-80687600	Weak transcription	Aorta	Aorta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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