Variant report
Variant | rs596212 |
---|---|
Chromosome Location | chr11:56312889-56312890 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10400288 | 0.91[ASN][1000 genomes] |
rs10736677 | 0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs10750820 | 0.91[ASN][1000 genomes] |
rs10792040 | 0.94[ASN][1000 genomes] |
rs10792043 | 0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs10896480 | 0.88[ASN][1000 genomes] |
rs11228212 | 0.91[ASN][1000 genomes] |
rs11228684 | 0.85[ASN][1000 genomes] |
rs11228686 | 0.85[ASN][1000 genomes] |
rs11228687 | 0.85[ASN][1000 genomes] |
rs12418150 | 0.88[ASN][1000 genomes] |
rs12418301 | 0.85[ASN][1000 genomes] |
rs1605924 | 0.85[ASN][1000 genomes] |
rs17150739 | 0.97[ASN][1000 genomes] |
rs1945196 | 0.97[ASN][1000 genomes] |
rs1945210 | 0.91[ASN][1000 genomes] |
rs2202932 | 0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs2511143 | 0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs3938998 | 0.91[ASN][1000 genomes] |
rs4500505 | 0.97[ASN][1000 genomes] |
rs4939034 | 0.85[ASN][1000 genomes] |
rs4939035 | 0.85[ASN][1000 genomes] |
rs4939043 | 0.91[ASN][1000 genomes] |
rs4939061 | 0.94[ASN][1000 genomes] |
rs583589 | 0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[ASN][1000 genomes] |
rs584608 | 0.90[AFR][1000 genomes];0.93[ASN][1000 genomes] |
rs588805 | 0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs592744 | 0.97[ASN][1000 genomes] |
rs637912 | 0.97[ASN][1000 genomes] |
rs642630 | 0.97[ASN][1000 genomes] |
rs643384 | 0.97[ASN][1000 genomes] |
rs654634 | 0.97[ASN][1000 genomes] |
rs655779 | 0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs656565 | 0.86[AFR][1000 genomes];0.97[ASN][1000 genomes] |
rs6591381 | 0.83[ASN][1000 genomes] |
rs676901 | 0.97[ASN][1000 genomes] |
rs7939886 | 0.97[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1050024 | chr11:55900482-56518943 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 52 gene(s) | inside rSNPs | diseases |
2 | nsv497854 | chr11:55917298-56537994 | Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 50 gene(s) | inside rSNPs | diseases |
3 | nsv971949 | chr11:56126625-56344170 | Enhancers Weak transcription ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive region | 18 gene(s) | inside rSNPs | diseases |
4 | nsv468576 | chr11:56299930-56420029 | Weak transcription Flanking Active TSS Enhancers Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
5 | nsv555099 | chr11:56299930-56420029 | Enhancers Active TSS Weak transcription Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr11:56312800-56313400 | Enhancers | Rectal Mucosa Donor 31 | rectum |